miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27096 5' -47.9 NC_005832.1 + 25151 0.66 0.997788
Target:  5'- aGGUGUAAACAUCUaUAUUCCC-UCAg -3'
miRNA:   3'- -CUAUAUUUGUAGGaGUGAGGGuGGUg -5'
27096 5' -47.9 NC_005832.1 + 54797 0.66 0.997342
Target:  5'- ----cAGGCGUCC-CugUCCCACUc- -3'
miRNA:   3'- cuauaUUUGUAGGaGugAGGGUGGug -5'
27096 5' -47.9 NC_005832.1 + 56694 0.66 0.996825
Target:  5'- ----cAAACAUCCUCAgUUCgugCGCCAUg -3'
miRNA:   3'- cuauaUUUGUAGGAGUgAGG---GUGGUG- -5'
27096 5' -47.9 NC_005832.1 + 66274 0.67 0.994752
Target:  5'- ----gGGAag-CCUcCAUUCCCGCCGCg -3'
miRNA:   3'- cuauaUUUguaGGA-GUGAGGGUGGUG- -5'
27096 5' -47.9 NC_005832.1 + 90282 0.67 0.994752
Target:  5'- ----cGAGCcUCCUCGCguggUCCugCACg -3'
miRNA:   3'- cuauaUUUGuAGGAGUGa---GGGugGUG- -5'
27096 5' -47.9 NC_005832.1 + 50633 0.67 0.992842
Target:  5'- --aGUAGGCGaggugCCUCACcCCCAcguCCACg -3'
miRNA:   3'- cuaUAUUUGUa----GGAGUGaGGGU---GGUG- -5'
27096 5' -47.9 NC_005832.1 + 104298 0.67 0.992842
Target:  5'- ----aGAGCAaCCUCugUCCUAuCCAUg -3'
miRNA:   3'- cuauaUUUGUaGGAGugAGGGU-GGUG- -5'
27096 5' -47.9 NC_005832.1 + 11120 0.67 0.991699
Target:  5'- ----cGGACGUCCUCaaccuuauACUCCC-CCAa -3'
miRNA:   3'- cuauaUUUGUAGGAG--------UGAGGGuGGUg -5'
27096 5' -47.9 NC_005832.1 + 104415 0.67 0.991699
Target:  5'- --aGUGAuCAcUCC-CGCUCCCaACCACu -3'
miRNA:   3'- cuaUAUUuGU-AGGaGUGAGGG-UGGUG- -5'
27096 5' -47.9 NC_005832.1 + 60185 0.68 0.990415
Target:  5'- uAUGUGGu--UCCUgACUgCCGCCGCg -3'
miRNA:   3'- cUAUAUUuguAGGAgUGAgGGUGGUG- -5'
27096 5' -47.9 NC_005832.1 + 80381 0.68 0.990415
Target:  5'- gGGUGUu--UAUCgUCACUCCCACgGg -3'
miRNA:   3'- -CUAUAuuuGUAGgAGUGAGGGUGgUg -5'
27096 5' -47.9 NC_005832.1 + 2606 0.68 0.988981
Target:  5'- --cAUAGACAugUCCUCcCUgCUCACCAUg -3'
miRNA:   3'- cuaUAUUUGU--AGGAGuGA-GGGUGGUG- -5'
27096 5' -47.9 NC_005832.1 + 10401 0.68 0.987385
Target:  5'- -------uCAUCCUCAC-CCC-CCACu -3'
miRNA:   3'- cuauauuuGUAGGAGUGaGGGuGGUG- -5'
27096 5' -47.9 NC_005832.1 + 9151 0.68 0.987385
Target:  5'- cGAUGUGcaccAGgGUCCUCugaUCCCAguCCACg -3'
miRNA:   3'- -CUAUAU----UUgUAGGAGug-AGGGU--GGUG- -5'
27096 5' -47.9 NC_005832.1 + 19986 0.68 0.983663
Target:  5'- ----cAGGCgGUCCugaggaUCGCUCCCACCAg -3'
miRNA:   3'- cuauaUUUG-UAGG------AGUGAGGGUGGUg -5'
27096 5' -47.9 NC_005832.1 + 93729 0.7 0.967516
Target:  5'- ---cUGAGCAUgaUCGCUCCCGCUAg -3'
miRNA:   3'- cuauAUUUGUAggAGUGAGGGUGGUg -5'
27096 5' -47.9 NC_005832.1 + 10188 0.7 0.960222
Target:  5'- cGGUGgaGAGgAUCCUCaugACUUCCGCCGCc -3'
miRNA:   3'- -CUAUa-UUUgUAGGAG---UGAGGGUGGUG- -5'
27096 5' -47.9 NC_005832.1 + 33065 0.7 0.956181
Target:  5'- ---cUGAugGgCCUCGCUCCCGCUgACa -3'
miRNA:   3'- cuauAUUugUaGGAGUGAGGGUGG-UG- -5'
27096 5' -47.9 NC_005832.1 + 29165 0.71 0.947283
Target:  5'- cAUGUGAGCGUCCUUGCg-CCAgCACc -3'
miRNA:   3'- cUAUAUUUGUAGGAGUGagGGUgGUG- -5'
27096 5' -47.9 NC_005832.1 + 98270 0.71 0.937267
Target:  5'- uGAUAUGuccugccuacGGcCGUCCUCACUCCaauguCCACg -3'
miRNA:   3'- -CUAUAU----------UU-GUAGGAGUGAGGgu---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.