miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27097 3' -58.3 NC_005832.1 + 96455 0.66 0.745329
Target:  5'- -gCGGGuCaCUGCGACUCCAaggCGGu- -3'
miRNA:   3'- uaGCCCuG-GGCGCUGAGGUaa-GCCug -5'
27097 3' -58.3 NC_005832.1 + 23291 0.66 0.725591
Target:  5'- --aGGGAUCCGUcaccGugUCCAcucaCGGACa -3'
miRNA:   3'- uagCCCUGGGCG----CugAGGUaa--GCCUG- -5'
27097 3' -58.3 NC_005832.1 + 35302 0.66 0.715594
Target:  5'- --aGGGauGCCCGUGACuggcuUCCAcgUCGGAg -3'
miRNA:   3'- uagCCC--UGGGCGCUG-----AGGUa-AGCCUg -5'
27097 3' -58.3 NC_005832.1 + 78345 0.67 0.695392
Target:  5'- -aUGGGGuuCGCGGCggCCGUgcaGGACa -3'
miRNA:   3'- uaGCCCUggGCGCUGa-GGUAag-CCUG- -5'
27097 3' -58.3 NC_005832.1 + 96379 0.67 0.685207
Target:  5'- uUCGGGGCUCGCG-CUCa----GGGCc -3'
miRNA:   3'- uAGCCCUGGGCGCuGAGguaagCCUG- -5'
27097 3' -58.3 NC_005832.1 + 90788 0.67 0.679073
Target:  5'- --aGGGGCCCGCccucggccgagaugaGGCUCCGaggUCGGuGCc -3'
miRNA:   3'- uagCCCUGGGCG---------------CUGAGGUa--AGCC-UG- -5'
27097 3' -58.3 NC_005832.1 + 97707 0.68 0.602845
Target:  5'- -cUGGGAUgCCGCGGCcgCCAUcUGGGCu -3'
miRNA:   3'- uaGCCCUG-GGCGCUGa-GGUAaGCCUG- -5'
27097 3' -58.3 NC_005832.1 + 66784 0.68 0.582317
Target:  5'- -aUGGGACCgGUGGCUCU-UUCGGcCu -3'
miRNA:   3'- uaGCCCUGGgCGCUGAGGuAAGCCuG- -5'
27097 3' -58.3 NC_005832.1 + 55995 0.7 0.511949
Target:  5'- -aCGGGGCCCGCGuagCCGUaCGcGGCc -3'
miRNA:   3'- uaGCCCUGGGCGCugaGGUAaGC-CUG- -5'
27097 3' -58.3 NC_005832.1 + 70992 0.73 0.343542
Target:  5'- cGUUGGGGCuCUGCGAUgucCCGUUgGGACu -3'
miRNA:   3'- -UAGCCCUG-GGCGCUGa--GGUAAgCCUG- -5'
27097 3' -58.3 NC_005832.1 + 72756 1.06 0.001818
Target:  5'- cAUCGGGACCCGCGACUCCAUUCGGACc -3'
miRNA:   3'- -UAGCCCUGGGCGCUGAGGUAAGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.