miRNA: 3'- ggCAGGugAUGCUGCAg---CC-CUGGGac -5'
miRNA: 3'- gGCa-GGUGA---UGCUGCAg--CCCUGGGac -5'
miRNA: 3'- -GGCAGGUGAUGCUGCAGCCCUGGGAC- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27097 | 5' | -57.1 | NC_005832.1 | + | 43260 | 0.7 | 0.608165 |
|
Target: 5'- -gGUCCugUGCGGCGUgacaGGuGACCCc- -3' miRNA: 3'- ggCAGGugAUGCUGCAg---CC-CUGGGac -5' |
|||||||
| 27097 | 5' | -57.1 | NC_005832.1 | + | 75115 | 0.7 | 0.587876 |
|
Target: 5'- gCGggCCACUgggACGACGUgagGGGACCCa- -3' miRNA: 3'- gGCa-GGUGA---UGCUGCAg--CCCUGGGac -5' |
|||||||
| 27097 | 5' | -57.1 | NC_005832.1 | + | 72722 | 1.1 | 0.001649 |
|
Target: 5'- gCCGUCCACUACGACGUCGGGACCCUGa -3' miRNA: 3'- -GGCAGGUGAUGCUGCAGCCCUGGGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home