Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 102817 | 0.66 | 0.826349 |
Target: 5'- cGAGAGCAGggugaACgCUCCUCagcuuagGcCUCCg -3' miRNA: 3'- cCUCUCGUCag---UG-GAGGAGga-----C-GAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 29432 | 0.66 | 0.834865 |
Target: 5'- cGAGAGCgccGGgacCCUgCUCCUGCcCCu -3' miRNA: 3'- cCUCUCG---UCaguGGAgGAGGACGaGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 89571 | 0.66 | 0.84319 |
Target: 5'- aGGGGGGCcGUCagccugucgaGCUUCCUCgUGaugUCCg -3' miRNA: 3'- -CCUCUCGuCAG----------UGGAGGAGgACg--AGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 10310 | 0.66 | 0.839052 |
Target: 5'- gGGAGAggcggugGCAGUCACCgUCCacaggcugguggCUGUUCCc -3' miRNA: 3'- -CCUCU-------CGUCAGUGG-AGGag----------GACGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 52968 | 0.66 | 0.826349 |
Target: 5'- cGGcGAGaaGGUCugCUCCUUugagCUGCUCa -3' miRNA: 3'- -CCuCUCg-UCAGugGAGGAG----GACGAGg -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 31296 | 0.66 | 0.826349 |
Target: 5'- -cGGAGCAGgCACCacCCUCCU--UCCa -3' miRNA: 3'- ccUCUCGUCaGUGGa-GGAGGAcgAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 100585 | 0.66 | 0.834865 |
Target: 5'- aGGGGGaCGGUCACCggCUCgUcCUCCa -3' miRNA: 3'- cCUCUC-GUCAGUGGagGAGgAcGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 90907 | 0.67 | 0.79054 |
Target: 5'- cGAGGGCGG--GCC-CCUCaggagGCUCCu -3' miRNA: 3'- cCUCUCGUCagUGGaGGAGga---CGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 86328 | 0.67 | 0.781195 |
Target: 5'- ---aGGCGG-CugCUCCUCUUGCUgCu -3' miRNA: 3'- ccucUCGUCaGugGAGGAGGACGAgG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 835 | 0.67 | 0.742526 |
Target: 5'- cGAGGcGCAcGUCugCUCCcCCagGUUCCa -3' miRNA: 3'- cCUCU-CGU-CAGugGAGGaGGa-CGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 85539 | 0.68 | 0.711426 |
Target: 5'- uGGAGAGCGcGUCuucgucaaugACCUgcUCUCCUGUagccucgUCCa -3' miRNA: 3'- -CCUCUCGU-CAG----------UGGA--GGAGGACG-------AGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 55591 | 0.68 | 0.702259 |
Target: 5'- aGGAGGGCAGaggcggucagCGCCgccccagccaCUCCcGCUCCc -3' miRNA: 3'- -CCUCUCGUCa---------GUGGag--------GAGGaCGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 31170 | 0.68 | 0.692015 |
Target: 5'- aGGAGGGUGGU-GCCUgCUCCgaGCcCCa -3' miRNA: 3'- -CCUCUCGUCAgUGGAgGAGGa-CGaGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 90621 | 0.68 | 0.690987 |
Target: 5'- --cGAGCaccucagAGUCuaGCCUCCUCa-GCUCCg -3' miRNA: 3'- ccuCUCG-------UCAG--UGGAGGAGgaCGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 6838 | 0.68 | 0.712442 |
Target: 5'- uGGGGuAGUGGgggaGgCUCCUCCUGCcCCc -3' miRNA: 3'- -CCUC-UCGUCag--UgGAGGAGGACGaGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 54322 | 0.68 | 0.712442 |
Target: 5'- gGGAGAGUccuUgGCCuugaUCCUCCUGUUUCu -3' miRNA: 3'- -CCUCUCGuc-AgUGG----AGGAGGACGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 1613 | 0.69 | 0.685843 |
Target: 5'- uGGAG-GCAGUugucCACCgUCUCCucggaaggggaaaagUGCUCCa -3' miRNA: 3'- -CCUCuCGUCA----GUGGaGGAGG---------------ACGAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 29497 | 0.69 | 0.681719 |
Target: 5'- aGAGAGCcGUC-CCUCC-CCUGgauauagcCUCCc -3' miRNA: 3'- cCUCUCGuCAGuGGAGGaGGAC--------GAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 32547 | 0.69 | 0.668273 |
Target: 5'- -uGGAGCGGUC-CCguugacguugauggUCCUCCUGaugucCUCCg -3' miRNA: 3'- ccUCUCGUCAGuGG--------------AGGAGGAC-----GAGG- -5' |
|||||||
27099 | 3' | -56.5 | NC_005832.1 | + | 63386 | 0.69 | 0.671381 |
Target: 5'- --cGAGC-GUCuuacugauccGCCUCCUCCUcCUCCu -3' miRNA: 3'- ccuCUCGuCAG----------UGGAGGAGGAcGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home