miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27099 5' -60 NC_005832.1 + 50401 0.66 0.649745
Target:  5'- cACGGCGGca-GAGaGGUGGCCCUCg- -3'
miRNA:   3'- -UGCCGCUcccUUCgCCACUGGGAGaa -5'
27099 5' -60 NC_005832.1 + 48250 0.66 0.649745
Target:  5'- gUGGCGua-GAGGUGGUcccuGACCCUCUUu -3'
miRNA:   3'- uGCCGCuccCUUCGCCA----CUGGGAGAA- -5'
27099 5' -60 NC_005832.1 + 32250 0.66 0.63945
Target:  5'- gUGGUGAGGGggGCGaGgcUGACCgCcCUa -3'
miRNA:   3'- uGCCGCUCCCuuCGC-C--ACUGG-GaGAa -5'
27099 5' -60 NC_005832.1 + 96547 0.66 0.63945
Target:  5'- uGCGGCGGGGGcaGAGUaGGauccGGCUCUCa- -3'
miRNA:   3'- -UGCCGCUCCC--UUCG-CCa---CUGGGAGaa -5'
27099 5' -60 NC_005832.1 + 32169 0.66 0.63945
Target:  5'- aGCGGCGAGGGGAGUccacggcauggGGUccggaGCCCa--- -3'
miRNA:   3'- -UGCCGCUCCCUUCG-----------CCAc----UGGGagaa -5'
27099 5' -60 NC_005832.1 + 6333 0.66 0.629149
Target:  5'- cGCGGCG-GGGAAGCuGGUGGauaagcuccaguUCCUa-- -3'
miRNA:   3'- -UGCCGCuCCCUUCG-CCACU------------GGGAgaa -5'
27099 5' -60 NC_005832.1 + 67471 0.66 0.612676
Target:  5'- gGCGGCGguggcgggucugGGGGGAGCGGUcuugagGacggaagagacacaaGCCCUCa- -3'
miRNA:   3'- -UGCCGC------------UCCCUUCGCCA------C---------------UGGGAGaa -5'
27099 5' -60 NC_005832.1 + 11505 0.66 0.598291
Target:  5'- cUGGCcAGGGGAGCGGcGcUCCUCa- -3'
miRNA:   3'- uGCCGcUCCCUUCGCCaCuGGGAGaa -5'
27099 5' -60 NC_005832.1 + 79974 0.67 0.577833
Target:  5'- gUGGagGAGGGAGGUGGggGACCC-Ca- -3'
miRNA:   3'- uGCCg-CUCCCUUCGCCa-CUGGGaGaa -5'
27099 5' -60 NC_005832.1 + 91768 0.67 0.547456
Target:  5'- -aGGUGuGGGAGGCGGUGGCg----- -3'
miRNA:   3'- ugCCGCuCCCUUCGCCACUGggagaa -5'
27099 5' -60 NC_005832.1 + 42298 0.67 0.537438
Target:  5'- aACuGCGAGGGAGGCcGUGGCCa---- -3'
miRNA:   3'- -UGcCGCUCCCUUCGcCACUGGgagaa -5'
27099 5' -60 NC_005832.1 + 64341 0.69 0.469397
Target:  5'- gGCGGcCGGGGGAGGaCuGUGcCCCUUUg -3'
miRNA:   3'- -UGCC-GCUCCCUUC-GcCACuGGGAGAa -5'
27099 5' -60 NC_005832.1 + 53760 0.72 0.283097
Target:  5'- cCGGCGcgGGGGAAGCGGaccUGuuuACCCUCg- -3'
miRNA:   3'- uGCCGC--UCCCUUCGCC---AC---UGGGAGaa -5'
27099 5' -60 NC_005832.1 + 29900 0.73 0.276479
Target:  5'- gGCGGCGGGGGcGGCGGUGGaggCCa--- -3'
miRNA:   3'- -UGCCGCUCCCuUCGCCACUg--GGagaa -5'
27099 5' -60 NC_005832.1 + 74743 1.04 0.001626
Target:  5'- aACGGCGAGGGAAGCGGUGACCCUCUUu -3'
miRNA:   3'- -UGCCGCUCCCUUCGCCACUGGGAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.