Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 3' | -54.2 | NC_001491.2 | + | 121285 | 0.68 | 0.913375 |
Target: 5'- aCC-CACCCAUCAAUUaguggGCCcUCCCc -3' miRNA: 3'- -GGaGUGGGUGGUUAGgga--UGGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 145863 | 0.68 | 0.913375 |
Target: 5'- cCCUC-CCCAUCGGUgguggauccgaCCCggGCCAggggUCCCc -3' miRNA: 3'- -GGAGuGGGUGGUUA-----------GGGa-UGGU----AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 78249 | 0.68 | 0.907351 |
Target: 5'- cCCUCACCCGCagggaggaugaGAUCUgcgUACCGUCUa -3' miRNA: 3'- -GGAGUGGGUGg----------UUAGGg--AUGGUAGGg -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 115784 | 0.68 | 0.907351 |
Target: 5'- uCCUCGUCCGCCcggggguacGAUCCCUcgggGCCGgucgacagCCCu -3' miRNA: 3'- -GGAGUGGGUGG---------UUAGGGA----UGGUa-------GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 146339 | 0.68 | 0.906736 |
Target: 5'- gCCUC-CCCGCCucGUCUCUcggguagGCCAUgUCCg -3' miRNA: 3'- -GGAGuGGGUGGu-UAGGGA-------UGGUA-GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74246 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74182 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74118 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 74054 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 73990 | 0.68 | 0.900452 |
Target: 5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3' miRNA: 3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 82044 | 0.68 | 0.894597 |
Target: 5'- --cCACCCACCAA-CCgUACCAauaaCCa -3' miRNA: 3'- ggaGUGGGUGGUUaGGgAUGGUag--GG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 82550 | 0.68 | 0.894597 |
Target: 5'- uCCUCGCCCACaGAUCCUagGCgCAgcuugUCCUc -3' miRNA: 3'- -GGAGUGGGUGgUUAGGGa-UG-GU-----AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 3112 | 0.68 | 0.894597 |
Target: 5'- aCCUCAucUCCACCAgggagGUCUaCUACCcUUCCg -3' miRNA: 3'- -GGAGU--GGGUGGU-----UAGG-GAUGGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 24206 | 0.69 | 0.887873 |
Target: 5'- uCCUCACuUCAUCGAUCuuacacauugaCCUGCUAaCCCg -3' miRNA: 3'- -GGAGUG-GGUGGUUAG-----------GGAUGGUaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 118713 | 0.69 | 0.880923 |
Target: 5'- aCCggcCACCCGCCAAccuUCCCUucuCgGUCUUc -3' miRNA: 3'- -GGa--GUGGGUGGUU---AGGGAu--GgUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124142 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 123926 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 123980 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124034 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124088 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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