Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 5' | -54.9 | NC_001491.2 | + | 124904 | 0.68 | 0.885619 |
Target: 5'- cCGGucGAGGGGGugguGGCCGGaGAGGUg -3' miRNA: 3'- -GCCu-CUCUCUCuu--UUGGCCgCUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 147042 | 0.68 | 0.871393 |
Target: 5'- gCGGAGccGGAGAAGggcucgccGCCGGgCGAGGaCg -3' miRNA: 3'- -GCCUCucUCUCUUU--------UGGCC-GCUCCgG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 90386 | 0.68 | 0.863957 |
Target: 5'- aGGAcGGAGGGAGGGCCGcuGCGAGaaaGUCu -3' miRNA: 3'- gCCUcUCUCUCUUUUGGC--CGCUC---CGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 16969 | 0.69 | 0.856312 |
Target: 5'- cCGGAGAGugcuauGAGggGcUCuGCGGGGCg -3' miRNA: 3'- -GCCUCUCu-----CUCuuUuGGcCGCUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 140242 | 0.69 | 0.856312 |
Target: 5'- gCGGGGAcgGGGAcGggGGCgGGCGcggacGGGCUa -3' miRNA: 3'- -GCCUCU--CUCU-CuuUUGgCCGC-----UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 147422 | 0.69 | 0.848464 |
Target: 5'- gCGGAcGAG-GAGAAGGaggccgaggcuCCGGCcuGGGCCg -3' miRNA: 3'- -GCCU-CUCuCUCUUUU-----------GGCCGc-UCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 145107 | 0.69 | 0.840421 |
Target: 5'- cCGGGGuGccGGGGAcccuccgcCCGGgGAGGCCg -3' miRNA: 3'- -GCCUCuC--UCUCUuuu-----GGCCgCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 1498 | 0.69 | 0.815188 |
Target: 5'- uGGAGAuGGAGAcaGAGgaGGCGcGGCCc -3' miRNA: 3'- gCCUCUcUCUCU--UUUggCCGCuCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 121486 | 0.69 | 0.815188 |
Target: 5'- gGGAcGGGAuGAGggGGCUGGUGGacGGCg -3' miRNA: 3'- gCCU-CUCU-CUCuuUUGGCCGCU--CCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 116893 | 0.7 | 0.806434 |
Target: 5'- gCGGAcauggccuacccGAGAGAcGAGGCgGG-GAGGCCg -3' miRNA: 3'- -GCCU------------CUCUCUcUUUUGgCCgCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 117341 | 0.7 | 0.797523 |
Target: 5'- uGGGGAGGGugcgauacgGGggGACCGGgGAcucgcgggacgGGCUg -3' miRNA: 3'- gCCUCUCUC---------UCuuUUGGCCgCU-----------CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 111218 | 0.7 | 0.787549 |
Target: 5'- aGGGcgcagacGGGGGAGAAGGCCGGCugccccAGGaCCa -3' miRNA: 3'- gCCU-------CUCUCUCUUUUGGCCGc-----UCC-GG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 143382 | 0.71 | 0.731468 |
Target: 5'- gGGAGGGGGAGggGGaaaGGUG-GGCg -3' miRNA: 3'- gCCUCUCUCUCuuUUgg-CCGCuCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 19537 | 0.71 | 0.725566 |
Target: 5'- uGGGGAGGacagcaaaacuguccGGGAAAACCGGaGGGGUUg -3' miRNA: 3'- gCCUCUCU---------------CUCUUUUGGCCgCUCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 79525 | 0.71 | 0.721615 |
Target: 5'- gGGGGAGGGGGAuguuACCguugaugaGGCGuggcauGGCCa -3' miRNA: 3'- gCCUCUCUCUCUuu--UGG--------CCGCu-----CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 125573 | 0.72 | 0.701687 |
Target: 5'- uCGGAGGGGGGGGAuGCgCGcccCGAGGCg -3' miRNA: 3'- -GCCUCUCUCUCUUuUG-GCc--GCUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 140490 | 0.72 | 0.691631 |
Target: 5'- -aGAGGGAGGGAGAGCUaugggaagGGUGGGGUg -3' miRNA: 3'- gcCUCUCUCUCUUUUGG--------CCGCUCCGg -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 144520 | 0.72 | 0.661203 |
Target: 5'- uCGGAagaccGAGaAGGGAAGGuuGGCGGguGGCCg -3' miRNA: 3'- -GCCU-----CUC-UCUCUUUUggCCGCU--CCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 145321 | 0.73 | 0.630563 |
Target: 5'- cCGGAG-GAcggcccGGGAGAGCCGGC--GGCCg -3' miRNA: 3'- -GCCUCuCU------CUCUUUUGGCCGcuCCGG- -5' |
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2710 | 5' | -54.9 | NC_001491.2 | + | 53231 | 0.73 | 0.620341 |
Target: 5'- aCGGAG-GcGGGAAGcCCGGCGucgggaGGGCCg -3' miRNA: 3'- -GCCUCuCuCUCUUUuGGCCGC------UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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