Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27101 | 3' | -57.9 | NC_005832.1 | + | 84321 | 0.66 | 0.764226 |
Target: 5'- cGGCugcucGCCUAGACag--GGAgCCUCUCc -3' miRNA: 3'- aCCG-----CGGGUCUGguuaCCU-GGAGAGc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 67367 | 0.66 | 0.754568 |
Target: 5'- aGGCaGCCCccucucccaGGGCCugaGGACCUuCUCu -3' miRNA: 3'- aCCG-CGGG---------UCUGGuuaCCUGGA-GAGc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 74082 | 0.66 | 0.754568 |
Target: 5'- cGGUGUCCAGGCUggGAUGGACaa--CGa -3' miRNA: 3'- aCCGCGGGUCUGG--UUACCUGgagaGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 85929 | 0.66 | 0.754568 |
Target: 5'- aGGCuCCUGGACCuuuugagGGGCCUCa-- -3' miRNA: 3'- aCCGcGGGUCUGGuua----CCUGGAGagc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 91936 | 0.66 | 0.744799 |
Target: 5'- cGGCuCCCgaGGACag--GGACCUCUgCGg -3' miRNA: 3'- aCCGcGGG--UCUGguuaCCUGGAGA-GC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 65072 | 0.66 | 0.734929 |
Target: 5'- aGGCGUCUGGGCCGucguacucGGACacugUCUCGc -3' miRNA: 3'- aCCGCGGGUCUGGUua------CCUGg---AGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 66687 | 0.66 | 0.734929 |
Target: 5'- cUGGaaGCCCAGGCCGcggccgGGACCgugUUUGg -3' miRNA: 3'- -ACCg-CGGGUCUGGUua----CCUGGa--GAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 950 | 0.66 | 0.724967 |
Target: 5'- cGuGCGCCuCGGGCUucUGcACCUCUCa -3' miRNA: 3'- aC-CGCGG-GUCUGGuuACcUGGAGAGc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 67191 | 0.67 | 0.714923 |
Target: 5'- cGGCGUCCAGGUCA---GGCCUCUUu -3' miRNA: 3'- aCCGCGGGUCUGGUuacCUGGAGAGc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 79892 | 0.67 | 0.704807 |
Target: 5'- gGGCGgCCAuGGCCuc-GGACCcUUCGg -3' miRNA: 3'- aCCGCgGGU-CUGGuuaCCUGGaGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 53234 | 0.67 | 0.703791 |
Target: 5'- uUGGUGuaaucucuCCCAGucucggaACCGGUGGcCCUCUUGa -3' miRNA: 3'- -ACCGC--------GGGUC-------UGGUUACCuGGAGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 56450 | 0.67 | 0.694627 |
Target: 5'- gGGCuacgucCCCAGGCCGucaagauagaGGGCUUCUCGu -3' miRNA: 3'- aCCGc-----GGGUCUGGUua--------CCUGGAGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 29331 | 0.67 | 0.684395 |
Target: 5'- cGGCuaCCucauGACCGAggagaggGGACCUCUg- -3' miRNA: 3'- aCCGcgGGu---CUGGUUa------CCUGGAGAgc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 88275 | 0.67 | 0.684395 |
Target: 5'- aGGaGCCU-GGCCAG-GGuCCUCUCGg -3' miRNA: 3'- aCCgCGGGuCUGGUUaCCuGGAGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 47726 | 0.67 | 0.663805 |
Target: 5'- aGGUcacaCAGGCCAGagacgagGGACCUCUCGu -3' miRNA: 3'- aCCGcgg-GUCUGGUUa------CCUGGAGAGC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 56601 | 0.68 | 0.653467 |
Target: 5'- aGGC-CUCGGGCC--UGGACCUCa-- -3' miRNA: 3'- aCCGcGGGUCUGGuuACCUGGAGagc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 27864 | 0.68 | 0.653467 |
Target: 5'- aGGCGgCCGGGCaggcccUGGACCUCc-- -3' miRNA: 3'- aCCGCgGGUCUGguu---ACCUGGAGagc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 87745 | 0.68 | 0.653467 |
Target: 5'- cGGgGCCUGGACCuugGGAgUCUCUgGg -3' miRNA: 3'- aCCgCGGGUCUGGuuaCCU-GGAGAgC- -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 48855 | 0.68 | 0.62238 |
Target: 5'- -uGCGCCCaAGGCCGucgaGUGcGACCUcCUCu -3' miRNA: 3'- acCGCGGG-UCUGGU----UAC-CUGGA-GAGc -5' |
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27101 | 3' | -57.9 | NC_005832.1 | + | 78604 | 0.68 | 0.605815 |
Target: 5'- cGGCGCCCAccGGCUcguGccccuacaucuccgcUGGACCUUUCa -3' miRNA: 3'- aCCGCGGGU--CUGGu--U---------------ACCUGGAGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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