miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27101 3' -57.9 NC_005832.1 + 73143 0.68 0.601681
Target:  5'- cUGGCGCgUcgGGGCCuuugGGGCCUCUg- -3'
miRNA:   3'- -ACCGCGgG--UCUGGuua-CCUGGAGAgc -5'
27101 3' -57.9 NC_005832.1 + 67367 0.66 0.754568
Target:  5'- aGGCaGCCCccucucccaGGGCCugaGGACCUuCUCu -3'
miRNA:   3'- aCCG-CGGG---------UCUGGuuaCCUGGA-GAGc -5'
27101 3' -57.9 NC_005832.1 + 84321 0.66 0.764226
Target:  5'- cGGCugcucGCCUAGACag--GGAgCCUCUCc -3'
miRNA:   3'- aCCG-----CGGGUCUGguuaCCU-GGAGAGc -5'
27101 3' -57.9 NC_005832.1 + 75911 1.08 0.001449
Target:  5'- aUGGCGCCCAGACCAAUGGACCUCUCGc -3'
miRNA:   3'- -ACCGCGGGUCUGGUUACCUGGAGAGC- -5'
27101 3' -57.9 NC_005832.1 + 15649 0.76 0.228184
Target:  5'- aGGUGCCCAGGCCAAUcuGCCUCa-- -3'
miRNA:   3'- aCCGCGGGUCUGGUUAccUGGAGagc -5'
27101 3' -57.9 NC_005832.1 + 39934 0.74 0.297513
Target:  5'- aGGCGCCCcgcuaGGACCGGUuGGACCcaccgCUCc -3'
miRNA:   3'- aCCGCGGG-----UCUGGUUA-CCUGGa----GAGc -5'
27101 3' -57.9 NC_005832.1 + 47623 0.7 0.481284
Target:  5'- gGGCGUCguGG-CAGUGGACCUgCUCc -3'
miRNA:   3'- aCCGCGGguCUgGUUACCUGGA-GAGc -5'
27101 3' -57.9 NC_005832.1 + 33080 0.7 0.510467
Target:  5'- gUGGcCGUCCAGuucCUGAUGGGCCUCg-- -3'
miRNA:   3'- -ACC-GCGGGUCu--GGUUACCUGGAGagc -5'
27101 3' -57.9 NC_005832.1 + 74579 0.69 0.569799
Target:  5'- cGGCGUCCAGGCCcGUcaGGuacuuuaGCCUCUUu -3'
miRNA:   3'- aCCGCGGGUCUGGuUA--CC-------UGGAGAGc -5'
27101 3' -57.9 NC_005832.1 + 950 0.66 0.724967
Target:  5'- cGuGCGCCuCGGGCUucUGcACCUCUCa -3'
miRNA:   3'- aC-CGCGG-GUCUGGuuACcUGGAGAGc -5'
27101 3' -57.9 NC_005832.1 + 67191 0.67 0.714923
Target:  5'- cGGCGUCCAGGUCA---GGCCUCUUu -3'
miRNA:   3'- aCCGCGGGUCUGGUuacCUGGAGAGc -5'
27101 3' -57.9 NC_005832.1 + 56601 0.68 0.653467
Target:  5'- aGGC-CUCGGGCC--UGGACCUCa-- -3'
miRNA:   3'- aCCGcGGGUCUGGuuACCUGGAGagc -5'
27101 3' -57.9 NC_005832.1 + 65072 0.66 0.734929
Target:  5'- aGGCGUCUGGGCCGucguacucGGACacugUCUCGc -3'
miRNA:   3'- aCCGCGGGUCUGGUua------CCUGg---AGAGC- -5'
27101 3' -57.9 NC_005832.1 + 87745 0.68 0.653467
Target:  5'- cGGgGCCUGGACCuugGGAgUCUCUgGg -3'
miRNA:   3'- aCCgCGGGUCUGGuuaCCU-GGAGAgC- -5'
27101 3' -57.9 NC_005832.1 + 56450 0.67 0.694627
Target:  5'- gGGCuacgucCCCAGGCCGucaagauagaGGGCUUCUCGu -3'
miRNA:   3'- aCCGc-----GGGUCUGGUua--------CCUGGAGAGC- -5'
27101 3' -57.9 NC_005832.1 + 91936 0.66 0.744799
Target:  5'- cGGCuCCCgaGGACag--GGACCUCUgCGg -3'
miRNA:   3'- aCCGcGGG--UCUGguuaCCUGGAGA-GC- -5'
27101 3' -57.9 NC_005832.1 + 88275 0.67 0.684395
Target:  5'- aGGaGCCU-GGCCAG-GGuCCUCUCGg -3'
miRNA:   3'- aCCgCGGGuCUGGUUaCCuGGAGAGC- -5'
27101 3' -57.9 NC_005832.1 + 29331 0.67 0.684395
Target:  5'- cGGCuaCCucauGACCGAggagaggGGACCUCUg- -3'
miRNA:   3'- aCCGcgGGu---CUGGUUa------CCUGGAGAgc -5'
27101 3' -57.9 NC_005832.1 + 87549 0.69 0.570822
Target:  5'- aUGGCcagcagauGCCU-GAUCAGgagGGACCUCUCa -3'
miRNA:   3'- -ACCG--------CGGGuCUGGUUa--CCUGGAGAGc -5'
27101 3' -57.9 NC_005832.1 + 48855 0.68 0.62238
Target:  5'- -uGCGCCCaAGGCCGucgaGUGcGACCUcCUCu -3'
miRNA:   3'- acCGCGGG-UCUGGU----UAC-CUGGA-GAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.