Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27101 | 5' | -61.5 | NC_005832.1 | + | 28054 | 0.66 | 0.57649 |
Target: 5'- -gCUCA-GGCCCUguccagGGUGGUGgggaccaaGAGGCc -3' miRNA: 3'- ugGAGUgCCGGGA------CCGCCACa-------CUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 20298 | 0.66 | 0.596575 |
Target: 5'- aGCCUuaaacucgucCAUGGUCCUGGCGuucUGAGGa -3' miRNA: 3'- -UGGA----------GUGCCGGGACCGCcacACUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 19837 | 0.66 | 0.546669 |
Target: 5'- cCCUgACGGUCUUGGCcGGUuucgGAGGa -3' miRNA: 3'- uGGAgUGCCGGGACCG-CCAca--CUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 10860 | 0.69 | 0.374457 |
Target: 5'- gACCcgCGuCGGgCCUGGCGGccuUGAGGUa -3' miRNA: 3'- -UGGa-GU-GCCgGGACCGCCac-ACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 10241 | 0.67 | 0.501979 |
Target: 5'- gACCUggcUAUGGCCUgGGCGGUcucgguguaauuccaGUGGGGg -3' miRNA: 3'- -UGGA---GUGCCGGGaCCGCCA---------------CACUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 7099 | 0.66 | 0.574489 |
Target: 5'- gUCUCA-GGuCCCcGGCGGUGaccagcguagagGAGGCu -3' miRNA: 3'- uGGAGUgCC-GGGaCCGCCACa-----------CUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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