Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27101 | 5' | -61.5 | NC_005832.1 | + | 75875 | 1.11 | 0.000422 |
Target: 5'- gACCUCACGGCCCUGGCGGUGUGAGGCg -3' miRNA: 3'- -UGGAGUGCCGGGACCGCCACACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 53991 | 0.77 | 0.130529 |
Target: 5'- gACCuUCAUGGCCCUGGagcuGUGgagGAGGCu -3' miRNA: 3'- -UGG-AGUGCCGGGACCgc--CACa--CUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 80324 | 0.71 | 0.320893 |
Target: 5'- uCCUCACGGgucCCCUGGUccagucGGaUG-GAGGCg -3' miRNA: 3'- uGGAGUGCC---GGGACCG------CC-ACaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 90921 | 0.7 | 0.343124 |
Target: 5'- aGCCUCAucuCGGCCgagGGCGGgccccucagGAGGCu -3' miRNA: 3'- -UGGAGU---GCCGGga-CCGCCaca------CUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 44170 | 0.7 | 0.350778 |
Target: 5'- uACCggcgggCACGGUCCUGGUGGg--GaAGGUg -3' miRNA: 3'- -UGGa-----GUGCCGGGACCGCCacaC-UCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 60223 | 0.7 | 0.350778 |
Target: 5'- uGCC-CAUGGCCagcuUGGCGuaggcuagGUGAGGCa -3' miRNA: 3'- -UGGaGUGCCGGg---ACCGCca------CACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 10860 | 0.69 | 0.374457 |
Target: 5'- gACCcgCGuCGGgCCUGGCGGccuUGAGGUa -3' miRNA: 3'- -UGGa-GU-GCCgGGACCGCCac-ACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 34133 | 0.68 | 0.442669 |
Target: 5'- aACUUUACagacagaaGGUUCUGGUGGUggGUGAGGUa -3' miRNA: 3'- -UGGAGUG--------CCGGGACCGCCA--CACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 75911 | 0.68 | 0.460793 |
Target: 5'- gGCCacCAgGGCCCUGGCcaaggagaGGggaGAGGCa -3' miRNA: 3'- -UGGa-GUgCCGGGACCG--------CCacaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 43812 | 0.68 | 0.47 |
Target: 5'- gGCC-CACggGGCCCUGcCGGUG-GuGGCc -3' miRNA: 3'- -UGGaGUG--CCGGGACcGCCACaCuCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 32205 | 0.67 | 0.498166 |
Target: 5'- aACCcgGCGuGgCCUGG-GGUGUGGGGUc -3' miRNA: 3'- -UGGagUGC-CgGGACCgCCACACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 10241 | 0.67 | 0.501979 |
Target: 5'- gACCUggcUAUGGCCUgGGCGGUcucgguguaauuccaGUGGGGg -3' miRNA: 3'- -UGGA---GUGCCGGGaCCGCCA---------------CACUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 38072 | 0.67 | 0.511567 |
Target: 5'- ---gUACGGCCCUGGCacgccugggauguaaGGcaucacagUGUGAGGUa -3' miRNA: 3'- uggaGUGCCGGGACCG---------------CC--------ACACUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 47724 | 0.67 | 0.517356 |
Target: 5'- uGCCUgACGGgCaUGGCGGccGcGAGGCc -3' miRNA: 3'- -UGGAgUGCCgGgACCGCCa-CaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 62301 | 0.67 | 0.517356 |
Target: 5'- uCCUCGgGaGCCUUGGCGuaa-GAGGCa -3' miRNA: 3'- uGGAGUgC-CGGGACCGCcacaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 39478 | 0.66 | 0.535854 |
Target: 5'- gGCCcCugGGCCCUGGUcgccgucguccccGGgg-GGGGUc -3' miRNA: 3'- -UGGaGugCCGGGACCG-------------CCacaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 87379 | 0.66 | 0.536834 |
Target: 5'- cGCCUugaCAUGGCCCUcaGGCucuccaGG-GUGAGGg -3' miRNA: 3'- -UGGA---GUGCCGGGA--CCG------CCaCACUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 94915 | 0.66 | 0.546669 |
Target: 5'- --gUCGCaGGCCCcugccccGGCGGUGaGGGGUa -3' miRNA: 3'- uggAGUG-CCGGGa------CCGCCACaCUCCG- -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 19837 | 0.66 | 0.546669 |
Target: 5'- cCCUgACGGUCUUGGCcGGUuucgGAGGa -3' miRNA: 3'- uGGAgUGCCGGGACCG-CCAca--CUCCg -5' |
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27101 | 5' | -61.5 | NC_005832.1 | + | 67018 | 0.66 | 0.55656 |
Target: 5'- cGCUgCGagGGCCCUGGCGGcGgccGuGGCg -3' miRNA: 3'- -UGGaGUg-CCGGGACCGCCaCa--CuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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