Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27102 | 5' | -59.1 | NC_005832.1 | + | 32312 | 0.66 | 0.720442 |
Target: 5'- gGGcUCCGGaccccaUGCCguggaCUCCCCUCgCCg-- -3' miRNA: 3'- -CC-AGGCC------ACGGa----GAGGGGAGaGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 99469 | 0.66 | 0.720442 |
Target: 5'- ---aCGGgaGCCUCUCCCgCUucgggcagCUCCUUGa -3' miRNA: 3'- ccagGCCa-CGGAGAGGG-GA--------GAGGAAC- -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 42917 | 0.67 | 0.649796 |
Target: 5'- gGGU-CGGUGUgUCUCagguCCUCUCCa-- -3' miRNA: 3'- -CCAgGCCACGgAGAGg---GGAGAGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 93849 | 0.67 | 0.659998 |
Target: 5'- gGGcCCGGgugggGCCuUCUCCUC-CUCCa-- -3' miRNA: 3'- -CCaGGCCa----CGG-AGAGGGGaGAGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 32194 | 0.68 | 0.588563 |
Target: 5'- gGGUCCGGaGCCcacaaggaUCCCC-CUCCa-- -3' miRNA: 3'- -CCAGGCCaCGGag------AGGGGaGAGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 74965 | 0.68 | 0.608925 |
Target: 5'- uGGUUCGGUuaCUCUUCCCccaUCCUg- -3' miRNA: 3'- -CCAGGCCAcgGAGAGGGGag-AGGAac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 67028 | 0.68 | 0.568327 |
Target: 5'- gGGUCCcacuacggccaGGUGCCccuucCUCCCgUCUCCc-- -3' miRNA: 3'- -CCAGG-----------CCACGGa----GAGGGgAGAGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 10181 | 0.69 | 0.499217 |
Target: 5'- ---aCGGUgacugccaccGCCUCUCCCCUggCCUUGa -3' miRNA: 3'- ccagGCCA----------CGGAGAGGGGAgaGGAAC- -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 39902 | 0.69 | 0.54827 |
Target: 5'- -cUCCGGgggGCCUCUagacCCCCUCauUCCg-- -3' miRNA: 3'- ccAGGCCa--CGGAGA----GGGGAG--AGGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 68184 | 0.7 | 0.443101 |
Target: 5'- -aUCaGGaUGCCUCcgCCCCUCUCCUc- -3' miRNA: 3'- ccAGgCC-ACGGAGa-GGGGAGAGGAac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 76408 | 0.73 | 0.320117 |
Target: 5'- uGG-CacaGGUGCCUCUCCUCUCUgCCg-- -3' miRNA: 3'- -CCaGg--CCACGGAGAGGGGAGA-GGaac -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 56478 | 0.73 | 0.305786 |
Target: 5'- aGGUCCaGGcccgagGCCuuggcaUCUCCCCUCUgCUUGa -3' miRNA: 3'- -CCAGG-CCa-----CGG------AGAGGGGAGAgGAAC- -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 45736 | 0.75 | 0.241509 |
Target: 5'- aGcCUGGUGCCgucugccaccgUCUCCCCUCUCUUUa -3' miRNA: 3'- cCaGGCCACGG-----------AGAGGGGAGAGGAAc -5' |
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27102 | 5' | -59.1 | NC_005832.1 | + | 76061 | 1.11 | 0.000785 |
Target: 5'- aGGUCCGGUGCCUCUCCCCUCUCCUUGg -3' miRNA: 3'- -CCAGGCCACGGAGAGGGGAGAGGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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