miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27110 3' -54.6 NC_005832.1 + 36149 0.66 0.885929
Target:  5'- aCGGCACCAGCUcgGCCGuCAGg--- -3'
miRNA:   3'- gGUCGUGGUCGAcgUGGUcGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 66508 0.66 0.874081
Target:  5'- gCCAGCccCCAuccccucaaggucccGCUGCACCugGGCAGg--- -3'
miRNA:   3'- -GGUCGu-GGU---------------CGACGUGG--UCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 103606 0.66 0.855178
Target:  5'- gCuGCACuCAGCUcCACCAGCuGgcGGg -3'
miRNA:   3'- gGuCGUG-GUCGAcGUGGUCGuCaaUC- -5'
27110 3' -54.6 NC_005832.1 + 18105 0.67 0.838449
Target:  5'- gCAGCAgCAGCgcccugUGCAgCAGCAGc--- -3'
miRNA:   3'- gGUCGUgGUCG------ACGUgGUCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 18168 0.67 0.838449
Target:  5'- gCAGCAgCAGCgcccugUGCAgCAGCAGc--- -3'
miRNA:   3'- gGUCGUgGUCG------ACGUgGUCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 55582 0.67 0.829773
Target:  5'- uCCGGCAUCAGgaGgGCagaGGCGGUcAGc -3'
miRNA:   3'- -GGUCGUGGUCgaCgUGg--UCGUCAaUC- -5'
27110 3' -54.6 NC_005832.1 + 56093 0.68 0.793189
Target:  5'- cCCGGCACCGGCccacgacGCgggaucguaACCGGCGGg--- -3'
miRNA:   3'- -GGUCGUGGUCGa------CG---------UGGUCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 18046 0.69 0.74396
Target:  5'- uCCAGCAgCAGCaGCAgCAGCGa---- -3'
miRNA:   3'- -GGUCGUgGUCGaCGUgGUCGUcaauc -5'
27110 3' -54.6 NC_005832.1 + 18217 0.69 0.723445
Target:  5'- uCCAGCAgCAGCagcagcgcccugUGCAgCAGCAGc--- -3'
miRNA:   3'- -GGUCGUgGUCG------------ACGUgGUCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 77141 0.69 0.702586
Target:  5'- cCCAGaCGCCAGCUGgcuuacugcuuuCACCGGCGa---- -3'
miRNA:   3'- -GGUC-GUGGUCGAC------------GUGGUCGUcaauc -5'
27110 3' -54.6 NC_005832.1 + 52801 0.69 0.690997
Target:  5'- cCCGGgGCCAuGCUGC-CCAggggcuuGCAGUUGa -3'
miRNA:   3'- -GGUCgUGGU-CGACGuGGU-------CGUCAAUc -5'
27110 3' -54.6 NC_005832.1 + 18016 0.74 0.452762
Target:  5'- uCCAGCAgCAGCaGCAgCAGCAGc--- -3'
miRNA:   3'- -GGUCGUgGUCGaCGUgGUCGUCaauc -5'
27110 3' -54.6 NC_005832.1 + 16517 0.77 0.300187
Target:  5'- aUAGUACCagGGCUGCACCAGCgAGUa-- -3'
miRNA:   3'- gGUCGUGG--UCGACGUGGUCG-UCAauc -5'
27110 3' -54.6 NC_005832.1 + 82418 0.89 0.048086
Target:  5'- uCCAGCACCAGCaguuagUGCuCCAGCAGUUAGu -3'
miRNA:   3'- -GGUCGUGGUCG------ACGuGGUCGUCAAUC- -5'
27110 3' -54.6 NC_005832.1 + 82568 0.95 0.020363
Target:  5'- aCCAGCACCAGCUGCACCAGCAc---- -3'
miRNA:   3'- -GGUCGUGGUCGACGUGGUCGUcaauc -5'
27110 3' -54.6 NC_005832.1 + 82612 1.07 0.003006
Target:  5'- aCAGCACCAGCUGCACCAGCAGUUAGu -3'
miRNA:   3'- gGUCGUGGUCGACGUGGUCGUCAAUC- -5'
27110 3' -54.6 NC_005832.1 + 82448 1.11 0.00168
Target:  5'- aCCAGCACCAGCUGCACCAGCAGUUAGu -3'
miRNA:   3'- -GGUCGUGGUCGACGUGGUCGUCAAUC- -5'
27110 3' -54.6 NC_005832.1 + 82493 1.11 0.00168
Target:  5'- aCCAGCACCAGCUGCACCAGCAGUUAGu -3'
miRNA:   3'- -GGUCGUGGUCGACGUGGUCGUCAAUC- -5'
27110 3' -54.6 NC_005832.1 + 82538 1.11 0.00168
Target:  5'- aCCAGCACCAGCUGCACCAGCAGUUAGu -3'
miRNA:   3'- -GGUCGUGGUCGACGUGGUCGUCAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.