miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27110 5' -59 NC_005832.1 + 18046 0.66 0.65342
Target:  5'- -uCCAGCaGCAgCAGCAgCAGCgacGCc -3'
miRNA:   3'- guGGUCGaCGUgGUCGUgGUCGa--CGu -5'
27110 5' -59 NC_005832.1 + 520 0.66 0.65342
Target:  5'- cCACUuuCUGCACCAGCccCCGGCgggGUc -3'
miRNA:   3'- -GUGGucGACGUGGUCGu-GGUCGa--CGu -5'
27110 5' -59 NC_005832.1 + 18168 0.66 0.642902
Target:  5'- gCAgCAGCaGCGCCcuguGCAgCAGCaGCAg -3'
miRNA:   3'- -GUgGUCGaCGUGGu---CGUgGUCGaCGU- -5'
27110 5' -59 NC_005832.1 + 18105 0.66 0.642902
Target:  5'- gCAgCAGCaGCGCCcuguGCAgCAGCaGCAa -3'
miRNA:   3'- -GUgGUCGaCGUGGu---CGUgGUCGaCGU- -5'
27110 5' -59 NC_005832.1 + 48129 0.66 0.632375
Target:  5'- gACUGGCUGgGCCcuGCACUGGUgGCAg -3'
miRNA:   3'- gUGGUCGACgUGGu-CGUGGUCGaCGU- -5'
27110 5' -59 NC_005832.1 + 18216 0.66 0.632374
Target:  5'- cCAgCAGCaGCAgCAGCGCCcuguGCaGCAg -3'
miRNA:   3'- -GUgGUCGaCGUgGUCGUGGu---CGaCGU- -5'
27110 5' -59 NC_005832.1 + 1019 0.66 0.611327
Target:  5'- aCGCCGGggGCugCAGCGCCuucacacccaggGGCaccUGCGg -3'
miRNA:   3'- -GUGGUCgaCGugGUCGUGG------------UCG---ACGU- -5'
27110 5' -59 NC_005832.1 + 18055 0.67 0.569494
Target:  5'- gCugCuGCUGCACagGGCGCUgcuGCUGCu -3'
miRNA:   3'- -GugGuCGACGUGg-UCGUGGu--CGACGu -5'
27110 5' -59 NC_005832.1 + 17971 0.67 0.569494
Target:  5'- gCugCuGCUGCACagGGCGCUgcuGCUGCu -3'
miRNA:   3'- -GugGuCGACGUGg-UCGUGGu--CGACGu -5'
27110 5' -59 NC_005832.1 + 18013 0.67 0.569494
Target:  5'- gCugCuGCUGCACagGGCGCUgcuGCUGCu -3'
miRNA:   3'- -GugGuCGACGUGg-UCGUGGu--CGACGu -5'
27110 5' -59 NC_005832.1 + 9783 0.67 0.569493
Target:  5'- aCGCCAagaUGgACCAGgACCAGCUGa- -3'
miRNA:   3'- -GUGGUcg-ACgUGGUCgUGGUCGACgu -5'
27110 5' -59 NC_005832.1 + 48274 0.68 0.498315
Target:  5'- gGCCGGCUuCGCCuGcCACCAG-UGCAg -3'
miRNA:   3'- gUGGUCGAcGUGGuC-GUGGUCgACGU- -5'
27110 5' -59 NC_005832.1 + 19824 0.68 0.488456
Target:  5'- gGCCGGUUucggaGgACCcgccGCGCCGGCUGCGg -3'
miRNA:   3'- gUGGUCGA-----CgUGGu---CGUGGUCGACGU- -5'
27110 5' -59 NC_005832.1 + 36227 0.69 0.449985
Target:  5'- uGCUGGCcGaCGCCAGCGCCAGg-GCGg -3'
miRNA:   3'- gUGGUCGaC-GUGGUCGUGGUCgaCGU- -5'
27110 5' -59 NC_005832.1 + 33749 0.7 0.40435
Target:  5'- uUugCGGCUGCACagAGUGCgCAGaCUGCAa -3'
miRNA:   3'- -GugGUCGACGUGg-UCGUG-GUC-GACGU- -5'
27110 5' -59 NC_005832.1 + 18016 0.71 0.370014
Target:  5'- -uCCAGCaGCAgCAGCAgCAGCaGCAa -3'
miRNA:   3'- guGGUCGaCGUgGUCGUgGUCGaCGU- -5'
27110 5' -59 NC_005832.1 + 82414 0.73 0.279454
Target:  5'- gCACCAGCaguuagUGCuCCAGCAguuagugcCCGGCUGUAa -3'
miRNA:   3'- -GUGGUCG------ACGuGGUCGU--------GGUCGACGU- -5'
27110 5' -59 NC_005832.1 + 103600 0.75 0.202217
Target:  5'- uCAUgGGCUGCACuCAGCuccACCAGCUGgCGg -3'
miRNA:   3'- -GUGgUCGACGUG-GUCG---UGGUCGAC-GU- -5'
27110 5' -59 NC_005832.1 + 82609 0.78 0.113402
Target:  5'- gCACCAGCUGCACCAGCAgUUAG-UGCu -3'
miRNA:   3'- -GUGGUCGACGUGGUCGU-GGUCgACGu -5'
27110 5' -59 NC_005832.1 + 82504 1.07 0.000927
Target:  5'- gCACCAGCUGCACCAGCACCAGCUGCAc -3'
miRNA:   3'- -GUGGUCGACGUGGUCGUGGUCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.