miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27111 5' -58.9 NC_005832.1 + 32786 0.66 0.6582
Target:  5'- gGCccgagACCAGgCACCAcGaCUGCACCAcCGCc -3'
miRNA:   3'- aCG-----UGGUC-GUGGU-C-GACGUGGUcGUG- -5'
27111 5' -58.9 NC_005832.1 + 4852 0.66 0.637119
Target:  5'- aGCACC---ACCGGCUuCGCCAGCu- -3'
miRNA:   3'- aCGUGGucgUGGUCGAcGUGGUCGug -5'
27111 5' -58.9 NC_005832.1 + 7278 0.66 0.626568
Target:  5'- aGCGCCGGgGCaCAGUccaacggGCACCAGgAg -3'
miRNA:   3'- aCGUGGUCgUG-GUCGa------CGUGGUCgUg -5'
27111 5' -58.9 NC_005832.1 + 36220 0.66 0.616021
Target:  5'- cGaCGCCAGCGCCAGggcggucgUGguCCAGCcCa -3'
miRNA:   3'- aC-GUGGUCGUGGUCg-------ACguGGUCGuG- -5'
27111 5' -58.9 NC_005832.1 + 29178 0.66 0.613913
Target:  5'- uUGCGCCAGCACCucagaGGUccccucuccucgGUcaugagguaGCCGGCGCa -3'
miRNA:   3'- -ACGUGGUCGUGG-----UCGa-----------CG---------UGGUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 1011 0.66 0.605487
Target:  5'- gGCugCAGCGCCuucacacccAGggGCACCuGCGg -3'
miRNA:   3'- aCGugGUCGUGG---------UCgaCGUGGuCGUg -5'
27111 5' -58.9 NC_005832.1 + 36096 0.66 0.605487
Target:  5'- cGCcCUGGCGCUGGC-GUcgGCCAGCAUg -3'
miRNA:   3'- aCGuGGUCGUGGUCGaCG--UGGUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 78822 0.67 0.584491
Target:  5'- cUGCGCCuuuGGCGugagCGGuCUGCGCCGGcCACu -3'
miRNA:   3'- -ACGUGG---UCGUg---GUC-GACGUGGUC-GUG- -5'
27111 5' -58.9 NC_005832.1 + 43336 0.67 0.584491
Target:  5'- aGCGCCGGaccaCGCCAGCcugGCGggAGCGCc -3'
miRNA:   3'- aCGUGGUC----GUGGUCGa--CGUggUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 43295 0.67 0.574044
Target:  5'- aGC-CCGGCAggcccuuucCCAGcCUGacggugGCCAGCACg -3'
miRNA:   3'- aCGuGGUCGU---------GGUC-GACg-----UGGUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 48247 0.67 0.574044
Target:  5'- gGC-CCAGCcaguccuCCAGCU-CACCAGCc- -3'
miRNA:   3'- aCGuGGUCGu------GGUCGAcGUGGUCGug -5'
27111 5' -58.9 NC_005832.1 + 98230 0.67 0.574044
Target:  5'- cGCACUcgGGCAUgAGCU---CCAGCACg -3'
miRNA:   3'- aCGUGG--UCGUGgUCGAcguGGUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 36158 0.68 0.521588
Target:  5'- cGCACUuuaacGGCACCAGCUcgGCCgucaggcccucuaGGCACu -3'
miRNA:   3'- aCGUGG-----UCGUGGUCGAcgUGG-------------UCGUG- -5'
27111 5' -58.9 NC_005832.1 + 98597 0.68 0.50251
Target:  5'- gGCG-CAGCACuCuGCUaUACCAGCGCa -3'
miRNA:   3'- aCGUgGUCGUG-GuCGAcGUGGUCGUG- -5'
27111 5' -58.9 NC_005832.1 + 508 0.69 0.463401
Target:  5'- gUGgGCCgAGUACCAcuuuCUGCACCAGCc- -3'
miRNA:   3'- -ACgUGG-UCGUGGUc---GACGUGGUCGug -5'
27111 5' -58.9 NC_005832.1 + 103607 0.69 0.453873
Target:  5'- cUGCACuCAGCuccACCAGCUG-GCgGGCAa -3'
miRNA:   3'- -ACGUG-GUCG---UGGUCGACgUGgUCGUg -5'
27111 5' -58.9 NC_005832.1 + 76410 0.69 0.444452
Target:  5'- aGgACCuGCGCCGGgaGgACCGGcCACa -3'
miRNA:   3'- aCgUGGuCGUGGUCgaCgUGGUC-GUG- -5'
27111 5' -58.9 NC_005832.1 + 18068 0.69 0.435141
Target:  5'- gUGCAgCAGCAgcaacgcccuguCCAGCaGCAgCAGCAg -3'
miRNA:   3'- -ACGUgGUCGU------------GGUCGaCGUgGUCGUg -5'
27111 5' -58.9 NC_005832.1 + 18023 0.7 0.416865
Target:  5'- cGCccuguCCAGCAgCAGCaGCAgCAGCAg -3'
miRNA:   3'- aCGu----GGUCGUgGUCGaCGUgGUCGUg -5'
27111 5' -58.9 NC_005832.1 + 77136 0.7 0.39035
Target:  5'- gGCGucCCAGaCGCCAGCUGgcuuacugcuuuCACCGGCGa -3'
miRNA:   3'- aCGU--GGUC-GUGGUCGAC------------GUGGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.