miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27115 3' -51.6 NC_005832.1 + 20850 0.66 0.973266
Target:  5'- gCCGAGGUGUACuCUGaccccgaCAUGGuCGACg -3'
miRNA:   3'- -GGUUUCACAUG-GACga-----GUGCCcGUUG- -5'
27115 3' -51.6 NC_005832.1 + 5924 0.66 0.970302
Target:  5'- gCAGGGUGgguUGCCUGUUaa-GGGCcACg -3'
miRNA:   3'- gGUUUCAC---AUGGACGAgugCCCGuUG- -5'
27115 3' -51.6 NC_005832.1 + 40902 0.66 0.96711
Target:  5'- gCCGGGGUGguggACCccGaCUaCAgGGGCAACc -3'
miRNA:   3'- -GGUUUCACa---UGGa-C-GA-GUgCCCGUUG- -5'
27115 3' -51.6 NC_005832.1 + 8206 0.66 0.96711
Target:  5'- cUCAuGGUGUACCUGUcUAUGGGagugGGCc -3'
miRNA:   3'- -GGUuUCACAUGGACGaGUGCCCg---UUG- -5'
27115 3' -51.6 NC_005832.1 + 83707 0.66 0.963682
Target:  5'- uUCAcuGGUGaucuCUUGUUCACGGGgGACu -3'
miRNA:   3'- -GGUu-UCACau--GGACGAGUGCCCgUUG- -5'
27115 3' -51.6 NC_005832.1 + 101052 0.66 0.963682
Target:  5'- cCCAAGGUGUggGCCgaugaCugGGGCuACg -3'
miRNA:   3'- -GGUUUCACA--UGGacga-GugCCCGuUG- -5'
27115 3' -51.6 NC_005832.1 + 83671 0.66 0.963682
Target:  5'- uUCAcuGGUGaucuCUUGUUCACGGGgGACu -3'
miRNA:   3'- -GGUu-UCACau--GGACGAGUGCCCgUUG- -5'
27115 3' -51.6 NC_005832.1 + 98592 0.66 0.960013
Target:  5'- uUCAcGGcccUGUGCCUGCcuaUCAUGGGaGACg -3'
miRNA:   3'- -GGUuUC---ACAUGGACG---AGUGCCCgUUG- -5'
27115 3' -51.6 NC_005832.1 + 42375 0.67 0.956096
Target:  5'- aCCAGAGcaUGgcgGCCcucCUCAUGGaGCAGCa -3'
miRNA:   3'- -GGUUUC--ACa--UGGac-GAGUGCC-CGUUG- -5'
27115 3' -51.6 NC_005832.1 + 8246 0.67 0.947498
Target:  5'- cUCGAAGgccgcCCUGCUCAgGGGUccGACc -3'
miRNA:   3'- -GGUUUCacau-GGACGAGUgCCCG--UUG- -5'
27115 3' -51.6 NC_005832.1 + 30753 0.67 0.937855
Target:  5'- cCCAAAGggaagACC-GCUCGCGGuGaCGGCg -3'
miRNA:   3'- -GGUUUCaca--UGGaCGAGUGCC-C-GUUG- -5'
27115 3' -51.6 NC_005832.1 + 68398 0.67 0.937855
Target:  5'- uCCGug--GUACCUGCaCACGGGgucaGACg -3'
miRNA:   3'- -GGUuucaCAUGGACGaGUGCCCg---UUG- -5'
27115 3' -51.6 NC_005832.1 + 98309 0.68 0.932635
Target:  5'- uCCAcGGUGggccugaGCCUGUcCugGGGCcACa -3'
miRNA:   3'- -GGUuUCACa------UGGACGaGugCCCGuUG- -5'
27115 3' -51.6 NC_005832.1 + 17580 0.68 0.927148
Target:  5'- gCCAAGaUGUcgggcaACCcgGCUUuCGGGCAGCa -3'
miRNA:   3'- -GGUUUcACA------UGGa-CGAGuGCCCGUUG- -5'
27115 3' -51.6 NC_005832.1 + 32308 0.69 0.895708
Target:  5'- uCCAGGGUccccGUgggACCUGUcCACGGGUcGCa -3'
miRNA:   3'- -GGUUUCA----CA---UGGACGaGUGCCCGuUG- -5'
27115 3' -51.6 NC_005832.1 + 99685 0.69 0.873732
Target:  5'- -gGAAGUacGCCUGCUUaaagACGGGCGAg -3'
miRNA:   3'- ggUUUCAcaUGGACGAG----UGCCCGUUg -5'
27115 3' -51.6 NC_005832.1 + 48773 0.7 0.823437
Target:  5'- aCGAGGUacgcGUAUCUGCUCAuucucuuuugcuCGGGCAu- -3'
miRNA:   3'- gGUUUCA----CAUGGACGAGU------------GCCCGUug -5'
27115 3' -51.6 NC_005832.1 + 4497 0.71 0.814321
Target:  5'- gCAGuAGgacuCCUGUUUGCGGGCAGCg -3'
miRNA:   3'- gGUU-UCacauGGACGAGUGCCCGUUG- -5'
27115 3' -51.6 NC_005832.1 + 52815 0.72 0.766161
Target:  5'- -gGGGGUGguccacgccgACCUGCaUACGGGUAACg -3'
miRNA:   3'- ggUUUCACa---------UGGACGaGUGCCCGUUG- -5'
27115 3' -51.6 NC_005832.1 + 29917 0.74 0.617878
Target:  5'- aCAGAG---GCCUGgUCugGGGCGGCg -3'
miRNA:   3'- gGUUUCacaUGGACgAGugCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.