Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 47548 | 0.66 | 0.688321 |
|
Target: 5'- --gGCCgGGACgCUCCUGGGCaGCaACAa -3' miRNA: 3'- ugaUGGaCCUG-GGGGACUCGaCG-UGU- -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 97171 | 0.66 | 0.667629 |
|
Target: 5'- --aGCCUGGACUCCCUGgacgucaagaAGCUcgACAg -3' miRNA: 3'- ugaUGGACCUGGGGGAC----------UCGAcgUGU- -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 36614 | 0.66 | 0.657234 |
|
Target: 5'- gGCUACgUcuuuacggcGGGCCCCCacGGCUGCAg- -3' miRNA: 3'- -UGAUGgA---------CCUGGGGGacUCGACGUgu -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 43539 | 0.66 | 0.646817 |
|
Target: 5'- -gUAUCUGGACCCCCuaauccccucUGGGUccaGCACc -3' miRNA: 3'- ugAUGGACCUGGGGG----------ACUCGa--CGUGu -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 76035 | 0.67 | 0.635345 |
|
Target: 5'- --gGCCaGGGCCcugguggCCCUGAcuGCUGCACu -3' miRNA: 3'- ugaUGGaCCUGG-------GGGACU--CGACGUGu -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 36063 | 0.67 | 0.625957 |
|
Target: 5'- --gGCCgggUGGACgCUCCUGGGCUGgACc -3' miRNA: 3'- ugaUGG---ACCUG-GGGGACUCGACgUGu -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 17348 | 0.69 | 0.483745 |
|
Target: 5'- gGCaUACCUGGACgCCUgGAGCgaGUACAc -3' miRNA: 3'- -UG-AUGGACCUGgGGGaCUCGa-CGUGU- -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 33581 | 0.7 | 0.464578 |
|
Target: 5'- cCUACCUGGACgCCCUGccuuuGGCcGC-CAg -3' miRNA: 3'- uGAUGGACCUGgGGGAC-----UCGaCGuGU- -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 868 | 0.7 | 0.464578 |
|
Target: 5'- cUUGCCgcaGGugCCCCUGGGUgugaagGCGCu -3' miRNA: 3'- uGAUGGa--CCugGGGGACUCGa-----CGUGu -5' |
|||||||
| 27120 | 3' | -58.7 | NC_005832.1 | + | 91736 | 1.08 | 0.001028 |
|
Target: 5'- gACUACCUGGACCCCCUGAGCUGCACAg -3' miRNA: 3'- -UGAUGGACCUGGGGGACUCGACGUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home