miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27120 5' -59 NC_005832.1 + 40335 0.66 0.733766
Target:  5'- ---uUGCGGGcGCCAu--AGCCCGGCa -3'
miRNA:   3'- ccacAUGCCC-CGGUcguUCGGGCUGc -5'
27120 5' -59 NC_005832.1 + 100308 0.66 0.733766
Target:  5'- aGGUaagcCGGGGuCCGGCAAGUCCa--- -3'
miRNA:   3'- -CCAcau-GCCCC-GGUCGUUCGGGcugc -5'
27120 5' -59 NC_005832.1 + 78927 0.66 0.72296
Target:  5'- uGGUGgagAUGGGGaggguugUCAGCGucaGGCUgGACGg -3'
miRNA:   3'- -CCACa--UGCCCC-------GGUCGU---UCGGgCUGC- -5'
27120 5' -59 NC_005832.1 + 48478 0.66 0.70408
Target:  5'- gGGUG-AC-GGGCUu-CAGGCCCGGCu -3'
miRNA:   3'- -CCACaUGcCCCGGucGUUCGGGCUGc -5'
27120 5' -59 NC_005832.1 + 21087 0.66 0.70408
Target:  5'- uGGUGauUGcCGGGGCCcGUAGGgacgcCCCGGCc -3'
miRNA:   3'- -CCAC--AU-GCCCCGGuCGUUC-----GGGCUGc -5'
27120 5' -59 NC_005832.1 + 54716 0.66 0.700075
Target:  5'- aGGUGgggACGGGguucgacGCCuGCGAgaggaccggccuguGCCUGGCGg -3'
miRNA:   3'- -CCACa--UGCCC-------CGGuCGUU--------------CGGGCUGC- -5'
27120 5' -59 NC_005832.1 + 85644 0.66 0.694052
Target:  5'- uGGcagGUGCGGGGgcuUCAGCcucaGAGUCUGACu -3'
miRNA:   3'- -CCa--CAUGCCCC---GGUCG----UUCGGGCUGc -5'
27120 5' -59 NC_005832.1 + 11003 0.67 0.663693
Target:  5'- gGGUGagcUACcucaaGGCCGcCAGGCCCGACGc -3'
miRNA:   3'- -CCAC---AUGcc---CCGGUcGUUCGGGCUGC- -5'
27120 5' -59 NC_005832.1 + 29580 0.67 0.651473
Target:  5'- aGGUGgacaucaucaGGGGCaggAGCAGGguCCCGGCGc -3'
miRNA:   3'- -CCACaug-------CCCCGg--UCGUUC--GGGCUGC- -5'
27120 5' -59 NC_005832.1 + 72640 0.67 0.633106
Target:  5'- cGG-GUcccGauGGGCCcGCgGGGCCCGACGg -3'
miRNA:   3'- -CCaCA---UgcCCCGGuCG-UUCGGGCUGC- -5'
27120 5' -59 NC_005832.1 + 72843 0.67 0.632086
Target:  5'- aGG-GUcUGGGGCCugAGCGcccucagGGCCCaGACGg -3'
miRNA:   3'- -CCaCAuGCCCCGG--UCGU-------UCGGG-CUGC- -5'
27120 5' -59 NC_005832.1 + 72940 0.67 0.622898
Target:  5'- cGGUaUACaGGGuCCcGUAGGuCCCGACGg -3'
miRNA:   3'- -CCAcAUGcCCC-GGuCGUUC-GGGCUGC- -5'
27120 5' -59 NC_005832.1 + 70470 0.68 0.599459
Target:  5'- aGGUGUACGGcccugucucuccuaGGCCugggAGCaAAGUCUGACc -3'
miRNA:   3'- -CCACAUGCC--------------CCGG----UCG-UUCGGGCUGc -5'
27120 5' -59 NC_005832.1 + 50414 0.68 0.58221
Target:  5'- aGGUGUGCaGGGacaCGGCGgcagagagguGGCCCucGACGc -3'
miRNA:   3'- -CCACAUGcCCCg--GUCGU----------UCGGG--CUGC- -5'
27120 5' -59 NC_005832.1 + 75158 0.68 0.573119
Target:  5'- uGGUGU-CGGGGacauagaggagaaaaCaagagaugGGCAGGCCCGACc -3'
miRNA:   3'- -CCACAuGCCCCg--------------G--------UCGUUCGGGCUGc -5'
27120 5' -59 NC_005832.1 + 12893 0.68 0.572111
Target:  5'- uGGcGUGCGGGGCCcuGCAcGGCgUgGACGu -3'
miRNA:   3'- -CCaCAUGCCCCGGu-CGU-UCG-GgCUGC- -5'
27120 5' -59 NC_005832.1 + 95932 0.69 0.552043
Target:  5'- ----cGCGGccaGGgCAGCAAGCCCGAgGg -3'
miRNA:   3'- ccacaUGCC---CCgGUCGUUCGGGCUgC- -5'
27120 5' -59 NC_005832.1 + 47252 0.69 0.536144
Target:  5'- --aGUGCccuGGGGCCAGgaCccuccagugucugacGAGCCCGACGa -3'
miRNA:   3'- ccaCAUG---CCCCGGUC--G---------------UUCGGGCUGC- -5'
27120 5' -59 NC_005832.1 + 54386 0.69 0.532194
Target:  5'- cGGUGgACaGGGUCGGCcccAGGCCCcACGa -3'
miRNA:   3'- -CCACaUGcCCCGGUCG---UUCGGGcUGC- -5'
27120 5' -59 NC_005832.1 + 83274 0.69 0.522365
Target:  5'- aGGUG-GCGGGGCCAaaGAGCuCCaGGCc -3'
miRNA:   3'- -CCACaUGCCCCGGUcgUUCG-GG-CUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.