Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27120 | 5' | -59 | NC_005832.1 | + | 9493 | 0.69 | 0.512608 |
Target: 5'- aGGUGUACGacGGCC-GUAGGuggaaCCCGGCGg -3' miRNA: 3'- -CCACAUGCc-CCGGuCGUUC-----GGGCUGC- -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 26600 | 0.71 | 0.445761 |
Target: 5'- aGGUG-GCGaGGGCCgccggguGGCu-GCCCGACa -3' miRNA: 3'- -CCACaUGC-CCCGG-------UCGuuCGGGCUGc -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 32097 | 0.71 | 0.437634 |
Target: 5'- -cUGUGCGGGGCCugaaAGGCCUcGCGg -3' miRNA: 3'- ccACAUGCCCCGGucg-UUCGGGcUGC- -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 95305 | 0.71 | 0.419883 |
Target: 5'- gGGUGgcUGGGGUCAGCA-GCCgucucUGACa -3' miRNA: 3'- -CCACauGCCCCGGUCGUuCGG-----GCUGc -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 6526 | 0.71 | 0.419883 |
Target: 5'- -cUGUGCGGGGCCagggacagggGGCAGGCggUGACGu -3' miRNA: 3'- ccACAUGCCCCGG----------UCGUUCGg-GCUGC- -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 1243 | 0.72 | 0.369351 |
Target: 5'- cGGgacgccgGCuGGGCCAcCAGGCCCGACGc -3' miRNA: 3'- -CCaca----UGcCCCGGUcGUUCGGGCUGC- -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 39855 | 0.76 | 0.205244 |
Target: 5'- uGGgagGUAUGGGGCCAGaGGGCCCaaagggaGACGa -3' miRNA: 3'- -CCa--CAUGCCCCGGUCgUUCGGG-------CUGC- -5' |
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27120 | 5' | -59 | NC_005832.1 | + | 91699 | 1.11 | 0.000847 |
Target: 5'- uGGUGUACGGGGCCAGCAAGCCCGACGa -3' miRNA: 3'- -CCACAUGCCCCGGUCGUUCGGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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