miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27121 3' -50.6 NC_005832.1 + 29422 0.66 0.98367
Target:  5'- gGCU-CCACcaugCCAGguuCCCCGAGUa- -3'
miRNA:   3'- -CGAaGGUGua--GGUUau-GGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 47943 0.66 0.980674
Target:  5'- --cUCCAgGUCCAGggccaccacggugACCUCGGGCUg -3'
miRNA:   3'- cgaAGGUgUAGGUUa------------UGGGGUUCGAg -5'
27121 3' -50.6 NC_005832.1 + 61541 0.66 0.979271
Target:  5'- aGCUUUcugCACAUuuugUCGAaGCCCCAguuGGCUCu -3'
miRNA:   3'- -CGAAG---GUGUA----GGUUaUGGGGU---UCGAG- -5'
27121 3' -50.6 NC_005832.1 + 102494 0.66 0.976768
Target:  5'- aGCUUCgACugccugaCUGcgGCCuCCGAGCUCg -3'
miRNA:   3'- -CGAAGgUGua-----GGUuaUGG-GGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 25713 0.66 0.976768
Target:  5'- aGCUgaUCCACccCCAu--CCCCGAGUa- -3'
miRNA:   3'- -CGA--AGGUGuaGGUuauGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 87389 0.66 0.97405
Target:  5'- aGUUUCCAgAcgCCuugacaugGCCCuCAGGCUCu -3'
miRNA:   3'- -CGAAGGUgUa-GGuua-----UGGG-GUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 86823 0.66 0.971108
Target:  5'- ---cCCACGUCCcGUugCCCGugAGCa- -3'
miRNA:   3'- cgaaGGUGUAGGuUAugGGGU--UCGag -5'
27121 3' -50.6 NC_005832.1 + 80975 0.66 0.971108
Target:  5'- --aUCC-CGUCCAggGCCCCGGGg-- -3'
miRNA:   3'- cgaAGGuGUAGGUuaUGGGGUUCgag -5'
27121 3' -50.6 NC_005832.1 + 38034 0.67 0.967933
Target:  5'- uGUUUaCCACGUCCaAGUGCUUUAAGCc- -3'
miRNA:   3'- -CGAA-GGUGUAGG-UUAUGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 71265 0.67 0.964519
Target:  5'- gGCggugUCUGCGUggCCAAUgucgguggACCCCAAGCa- -3'
miRNA:   3'- -CGa---AGGUGUA--GGUUA--------UGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 93754 0.67 0.964164
Target:  5'- gGCUcacacccUCCACG-CCGGaGCCCUGAGCa- -3'
miRNA:   3'- -CGA-------AGGUGUaGGUUaUGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 10168 0.67 0.960858
Target:  5'- aCUUCCGCcgCCGAcuguUCCCu-GCUCa -3'
miRNA:   3'- cGAAGGUGuaGGUUau--GGGGuuCGAG- -5'
27121 3' -50.6 NC_005832.1 + 96976 0.67 0.956129
Target:  5'- gGUUcCCGCAagguggaggagCAGUGCUCCAAGCUCa -3'
miRNA:   3'- -CGAaGGUGUag---------GUUAUGGGGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 8077 0.67 0.95277
Target:  5'- ---gCCGCcgCCA--GCCCCAGGgUCu -3'
miRNA:   3'- cgaaGGUGuaGGUuaUGGGGUUCgAG- -5'
27121 3' -50.6 NC_005832.1 + 47031 0.68 0.943628
Target:  5'- ---aCUGCGUCCAcgACCCCAGGa-- -3'
miRNA:   3'- cgaaGGUGUAGGUuaUGGGGUUCgag -5'
27121 3' -50.6 NC_005832.1 + 11275 0.68 0.938653
Target:  5'- aGCUUCCugGUCCucuccuGGUcCCCCAugucGGCg- -3'
miRNA:   3'- -CGAAGGugUAGG------UUAuGGGGU----UCGag -5'
27121 3' -50.6 NC_005832.1 + 19317 0.69 0.922081
Target:  5'- aGgUUCCGCAgCCAAgACuCCCAGGC-Cg -3'
miRNA:   3'- -CgAAGGUGUaGGUUaUG-GGGUUCGaG- -5'
27121 3' -50.6 NC_005832.1 + 31325 0.69 0.916007
Target:  5'- cCUcCCAUGUCCAGUAggauCCUgGGGCUCg -3'
miRNA:   3'- cGAaGGUGUAGGUUAU----GGGgUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 43363 0.69 0.896151
Target:  5'- --gUCCACAUCCAcagacgcggACCCCGcAGCg- -3'
miRNA:   3'- cgaAGGUGUAGGUua-------UGGGGU-UCGag -5'
27121 3' -50.6 NC_005832.1 + 3946 0.69 0.896151
Target:  5'- uGCgUCCugGUUgGGaugGCCCuCAAGCUCg -3'
miRNA:   3'- -CGaAGGugUAGgUUa--UGGG-GUUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.