Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27121 | 3' | -50.6 | NC_005832.1 | + | 541 | 0.76 | 0.58157 |
Target: 5'- gGCggggUCCGCGUCCGAggacACCCUgcucacGAGCUCc -3' miRNA: 3'- -CGa---AGGUGUAGGUUa---UGGGG------UUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 3946 | 0.69 | 0.896151 |
Target: 5'- uGCgUCCugGUUgGGaugGCCCuCAAGCUCg -3' miRNA: 3'- -CGaAGGugUAGgUUa--UGGG-GUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 8077 | 0.67 | 0.95277 |
Target: 5'- ---gCCGCcgCCA--GCCCCAGGgUCu -3' miRNA: 3'- cgaaGGUGuaGGUuaUGGGGUUCgAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 10168 | 0.67 | 0.960858 |
Target: 5'- aCUUCCGCcgCCGAcuguUCCCu-GCUCa -3' miRNA: 3'- cGAAGGUGuaGGUUau--GGGGuuCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 11275 | 0.68 | 0.938653 |
Target: 5'- aGCUUCCugGUCCucuccuGGUcCCCCAugucGGCg- -3' miRNA: 3'- -CGAAGGugUAGG------UUAuGGGGU----UCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 15178 | 0.71 | 0.822927 |
Target: 5'- aGCcUCCuuguCAUCCAG-ACCUgAGGCUCa -3' miRNA: 3'- -CGaAGGu---GUAGGUUaUGGGgUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 16101 | 0.7 | 0.865997 |
Target: 5'- aCUgCCACAUCCAGacauuUACCgCgAGGCUCc -3' miRNA: 3'- cGAaGGUGUAGGUU-----AUGG-GgUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 19317 | 0.69 | 0.922081 |
Target: 5'- aGgUUCCGCAgCCAAgACuCCCAGGC-Cg -3' miRNA: 3'- -CgAAGGUGUaGGUUaUG-GGGUUCGaG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 20286 | 0.72 | 0.794618 |
Target: 5'- ---cCCAgCGUCCGcaACCCCAGGCUg -3' miRNA: 3'- cgaaGGU-GUAGGUuaUGGGGUUCGAg -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 25713 | 0.66 | 0.976768 |
Target: 5'- aGCUgaUCCACccCCAu--CCCCGAGUa- -3' miRNA: 3'- -CGA--AGGUGuaGGUuauGGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 29422 | 0.66 | 0.98367 |
Target: 5'- gGCU-CCACcaugCCAGguuCCCCGAGUa- -3' miRNA: 3'- -CGAaGGUGua--GGUUau-GGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 29975 | 0.71 | 0.84944 |
Target: 5'- gGCUUaucucCCGCGUCgAGgaACCCCAgggAGCUCa -3' miRNA: 3'- -CGAA-----GGUGUAGgUUa-UGGGGU---UCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 31325 | 0.69 | 0.916007 |
Target: 5'- cCUcCCAUGUCCAGUAggauCCUgGGGCUCg -3' miRNA: 3'- cGAaGGUGUAGGUUAU----GGGgUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 35286 | 0.74 | 0.66812 |
Target: 5'- gGCUUCCACGUCgGAggGCCCCuguccgaAGGCa- -3' miRNA: 3'- -CGAAGGUGUAGgUUa-UGGGG-------UUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 38034 | 0.67 | 0.967933 |
Target: 5'- uGUUUaCCACGUCCaAGUGCUUUAAGCc- -3' miRNA: 3'- -CGAA-GGUGUAGG-UUAUGGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 39077 | 0.71 | 0.846877 |
Target: 5'- --aUCCGgaucccaggagggcCGUCCGggACCCCAGGUUCa -3' miRNA: 3'- cgaAGGU--------------GUAGGUuaUGGGGUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 43137 | 0.7 | 0.881584 |
Target: 5'- aGCUgCCuCAUCCugauguuuuUACCCCugAAGCUCa -3' miRNA: 3'- -CGAaGGuGUAGGuu-------AUGGGG--UUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 43363 | 0.69 | 0.896151 |
Target: 5'- --gUCCACAUCCAcagacgcggACCCCGcAGCg- -3' miRNA: 3'- cgaAGGUGUAGGUua-------UGGGGU-UCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 46862 | 0.72 | 0.764791 |
Target: 5'- --gUCCAgGUCCcacaGCUCCGAGCUCa -3' miRNA: 3'- cgaAGGUgUAGGuua-UGGGGUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 47031 | 0.68 | 0.943628 |
Target: 5'- ---aCUGCGUCCAcgACCCCAGGa-- -3' miRNA: 3'- cgaaGGUGUAGGUuaUGGGGUUCgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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