miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27121 3' -50.6 NC_005832.1 + 541 0.76 0.58157
Target:  5'- gGCggggUCCGCGUCCGAggacACCCUgcucacGAGCUCc -3'
miRNA:   3'- -CGa---AGGUGUAGGUUa---UGGGG------UUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 47943 0.66 0.980674
Target:  5'- --cUCCAgGUCCAGggccaccacggugACCUCGGGCUg -3'
miRNA:   3'- cgaAGGUgUAGGUUa------------UGGGGUUCGAg -5'
27121 3' -50.6 NC_005832.1 + 61541 0.66 0.979271
Target:  5'- aGCUUUcugCACAUuuugUCGAaGCCCCAguuGGCUCu -3'
miRNA:   3'- -CGAAG---GUGUA----GGUUaUGGGGU---UCGAG- -5'
27121 3' -50.6 NC_005832.1 + 102494 0.66 0.976768
Target:  5'- aGCUUCgACugccugaCUGcgGCCuCCGAGCUCg -3'
miRNA:   3'- -CGAAGgUGua-----GGUuaUGG-GGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 25713 0.66 0.976768
Target:  5'- aGCUgaUCCACccCCAu--CCCCGAGUa- -3'
miRNA:   3'- -CGA--AGGUGuaGGUuauGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 86823 0.66 0.971108
Target:  5'- ---cCCACGUCCcGUugCCCGugAGCa- -3'
miRNA:   3'- cgaaGGUGUAGGuUAugGGGU--UCGag -5'
27121 3' -50.6 NC_005832.1 + 38034 0.67 0.967933
Target:  5'- uGUUUaCCACGUCCaAGUGCUUUAAGCc- -3'
miRNA:   3'- -CGAA-GGUGUAGG-UUAUGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 71265 0.67 0.964519
Target:  5'- gGCggugUCUGCGUggCCAAUgucgguggACCCCAAGCa- -3'
miRNA:   3'- -CGa---AGGUGUA--GGUUA--------UGGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 96976 0.67 0.956129
Target:  5'- gGUUcCCGCAagguggaggagCAGUGCUCCAAGCUCa -3'
miRNA:   3'- -CGAaGGUGUag---------GUUAUGGGGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 11275 0.68 0.938653
Target:  5'- aGCUUCCugGUCCucuccuGGUcCCCCAugucGGCg- -3'
miRNA:   3'- -CGAAGGugUAGG------UUAuGGGGU----UCGag -5'
27121 3' -50.6 NC_005832.1 + 93444 0.75 0.625346
Target:  5'- aGCUUCCAUAUCCAgaguGUAUCCCGAuaUg -3'
miRNA:   3'- -CGAAGGUGUAGGU----UAUGGGGUUcgAg -5'
27121 3' -50.6 NC_005832.1 + 46862 0.72 0.764791
Target:  5'- --gUCCAgGUCCcacaGCUCCGAGCUCa -3'
miRNA:   3'- cgaAGGUgUAGGuua-UGGGGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 20286 0.72 0.794618
Target:  5'- ---cCCAgCGUCCGcaACCCCAGGCUg -3'
miRNA:   3'- cgaaGGU-GUAGGUuaUGGGGUUCGAg -5'
27121 3' -50.6 NC_005832.1 + 15178 0.71 0.822927
Target:  5'- aGCcUCCuuguCAUCCAG-ACCUgAGGCUCa -3'
miRNA:   3'- -CGaAGGu---GUAGGUUaUGGGgUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 39077 0.71 0.846877
Target:  5'- --aUCCGgaucccaggagggcCGUCCGggACCCCAGGUUCa -3'
miRNA:   3'- cgaAGGU--------------GUAGGUuaUGGGGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 29975 0.71 0.84944
Target:  5'- gGCUUaucucCCGCGUCgAGgaACCCCAgggAGCUCa -3'
miRNA:   3'- -CGAA-----GGUGUAGgUUa-UGGGGU---UCGAG- -5'
27121 3' -50.6 NC_005832.1 + 19317 0.69 0.922081
Target:  5'- aGgUUCCGCAgCCAAgACuCCCAGGC-Cg -3'
miRNA:   3'- -CgAAGGUGUaGGUUaUG-GGGUUCGaG- -5'
27121 3' -50.6 NC_005832.1 + 29422 0.66 0.98367
Target:  5'- gGCU-CCACcaugCCAGguuCCCCGAGUa- -3'
miRNA:   3'- -CGAaGGUGua--GGUUau-GGGGUUCGag -5'
27121 3' -50.6 NC_005832.1 + 97305 0.76 0.549144
Target:  5'- aGCUUCUugACGUCCAGggAgUCCAGGCUCu -3'
miRNA:   3'- -CGAAGG--UGUAGGUUa-UgGGGUUCGAG- -5'
27121 3' -50.6 NC_005832.1 + 35286 0.74 0.66812
Target:  5'- gGCUUCCACGUCgGAggGCCCCuguccgaAGGCa- -3'
miRNA:   3'- -CGAAGGUGUAGgUUa-UGGGG-------UUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.