Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27121 | 3' | -50.6 | NC_005832.1 | + | 43137 | 0.7 | 0.881584 |
Target: 5'- aGCUgCCuCAUCCugauguuuuUACCCCugAAGCUCa -3' miRNA: 3'- -CGAaGGuGUAGGuu-------AUGGGG--UUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 35286 | 0.74 | 0.66812 |
Target: 5'- gGCUUCCACGUCgGAggGCCCCuguccgaAGGCa- -3' miRNA: 3'- -CGAAGGUGUAGgUUa-UGGGG-------UUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 97305 | 0.76 | 0.549144 |
Target: 5'- aGCUUCUugACGUCCAGggAgUCCAGGCUCu -3' miRNA: 3'- -CGAAGG--UGUAGGUUa-UgGGGUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 91859 | 1.13 | 0.003083 |
Target: 5'- gGCUUCCACAUCCAAUACCCCAAGCUCg -3' miRNA: 3'- -CGAAGGUGUAGGUUAUGGGGUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 8077 | 0.67 | 0.95277 |
Target: 5'- ---gCCGCcgCCA--GCCCCAGGgUCu -3' miRNA: 3'- cgaaGGUGuaGGUuaUGGGGUUCgAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 47031 | 0.68 | 0.943628 |
Target: 5'- ---aCUGCGUCCAcgACCCCAGGa-- -3' miRNA: 3'- cgaaGGUGUAGGUuaUGGGGUUCgag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 87389 | 0.66 | 0.97405 |
Target: 5'- aGUUUCCAgAcgCCuugacaugGCCCuCAGGCUCu -3' miRNA: 3'- -CGAAGGUgUa-GGuua-----UGGG-GUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 80975 | 0.66 | 0.971108 |
Target: 5'- --aUCC-CGUCCAggGCCCCGGGg-- -3' miRNA: 3'- cgaAGGuGUAGGUuaUGGGGUUCgag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 10168 | 0.67 | 0.960858 |
Target: 5'- aCUUCCGCcgCCGAcuguUCCCu-GCUCa -3' miRNA: 3'- cGAAGGUGuaGGUUau--GGGGuuCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 31325 | 0.69 | 0.916007 |
Target: 5'- cCUcCCAUGUCCAGUAggauCCUgGGGCUCg -3' miRNA: 3'- cGAaGGUGUAGGUUAU----GGGgUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 43363 | 0.69 | 0.896151 |
Target: 5'- --gUCCACAUCCAcagacgcggACCCCGcAGCg- -3' miRNA: 3'- cgaAGGUGUAGGUua-------UGGGGU-UCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 29422 | 0.66 | 0.98367 |
Target: 5'- gGCU-CCACcaugCCAGguuCCCCGAGUa- -3' miRNA: 3'- -CGAaGGUGua--GGUUau-GGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 3946 | 0.69 | 0.896151 |
Target: 5'- uGCgUCCugGUUgGGaugGCCCuCAAGCUCg -3' miRNA: 3'- -CGaAGGugUAGgUUa--UGGG-GUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 93754 | 0.67 | 0.964164 |
Target: 5'- gGCUcacacccUCCACG-CCGGaGCCCUGAGCa- -3' miRNA: 3'- -CGA-------AGGUGUaGGUUaUGGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 16101 | 0.7 | 0.865997 |
Target: 5'- aCUgCCACAUCCAGacauuUACCgCgAGGCUCc -3' miRNA: 3'- cGAaGGUGUAGGUU-----AUGG-GgUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 102494 | 0.66 | 0.976768 |
Target: 5'- aGCUUCgACugccugaCUGcgGCCuCCGAGCUCg -3' miRNA: 3'- -CGAAGgUGua-----GGUuaUGG-GGUUCGAG- -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 25713 | 0.66 | 0.976768 |
Target: 5'- aGCUgaUCCACccCCAu--CCCCGAGUa- -3' miRNA: 3'- -CGA--AGGUGuaGGUuauGGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 86823 | 0.66 | 0.971108 |
Target: 5'- ---cCCACGUCCcGUugCCCGugAGCa- -3' miRNA: 3'- cgaaGGUGUAGGuUAugGGGU--UCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 38034 | 0.67 | 0.967933 |
Target: 5'- uGUUUaCCACGUCCaAGUGCUUUAAGCc- -3' miRNA: 3'- -CGAA-GGUGUAGG-UUAUGGGGUUCGag -5' |
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27121 | 3' | -50.6 | NC_005832.1 | + | 29975 | 0.71 | 0.84944 |
Target: 5'- gGCUUaucucCCGCGUCgAGgaACCCCAgggAGCUCa -3' miRNA: 3'- -CGAA-----GGUGUAGgUUa-UGGGGU---UCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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