Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27121 | 5' | -51.2 | NC_005832.1 | + | 29282 | 0.74 | 0.664101 |
Target: 5'- gGGAGcguacuCGGGGAACCUGGcaUGGUGGa -3' miRNA: 3'- gCCUCaac---GUUUCUUGGACC--ACCACC- -5' |
|||||||
27121 | 5' | -51.2 | NC_005832.1 | + | 52705 | 0.79 | 0.435879 |
Target: 5'- aCGGAGU----GAGGGCCgUGGUGGUGGa -3' miRNA: 3'- -GCCUCAacguUUCUUGG-ACCACCACC- -5' |
|||||||
27121 | 5' | -51.2 | NC_005832.1 | + | 7504 | 0.79 | 0.426473 |
Target: 5'- cCGGGGaugagGUGAGGGACCUGGUGG-GGu -3' miRNA: 3'- -GCCUCaa---CGUUUCUUGGACCACCaCC- -5' |
|||||||
27121 | 5' | -51.2 | NC_005832.1 | + | 42606 | 0.8 | 0.372679 |
Target: 5'- gCGGAGacgcUGCGGAGcACCUGG-GGUGGa -3' miRNA: 3'- -GCCUCa---ACGUUUCuUGGACCaCCACC- -5' |
|||||||
27121 | 5' | -51.2 | NC_005832.1 | + | 91822 | 1.13 | 0.003485 |
Target: 5'- cCGGAGUUGCAAAGAACCUGGUGGUGGg -3' miRNA: 3'- -GCCUCAACGUUUCUUGGACCACCACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home