miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27122 3' -49.4 NC_005832.1 + 74175 0.65 0.993764
Target:  5'- gGUCCagcaaggUGGUUAACGACggUCGCaagagGCUGg -3'
miRNA:   3'- -CAGG-------ACCAGUUGUUGuaAGUG-----CGACg -5'
27122 3' -49.4 NC_005832.1 + 27650 0.66 0.989078
Target:  5'- -cCCUGGUCGAgggguUAACGggCACGggGCc -3'
miRNA:   3'- caGGACCAGUU-----GUUGUaaGUGCgaCG- -5'
27122 3' -49.4 NC_005832.1 + 6032 0.66 0.989078
Target:  5'- -cCCUGGUgCAggACGGCGUgCugGgCUGCc -3'
miRNA:   3'- caGGACCA-GU--UGUUGUAaGugC-GACG- -5'
27122 3' -49.4 NC_005832.1 + 35216 0.66 0.988474
Target:  5'- ----gGGUCGACGACucuuggguauacUCugGCUGCg -3'
miRNA:   3'- caggaCCAGUUGUUGua----------AGugCGACG- -5'
27122 3' -49.4 NC_005832.1 + 86076 0.67 0.987519
Target:  5'- uGUCUUGGUCuuuuUAACcuuuuuuagUUugGCUGCa -3'
miRNA:   3'- -CAGGACCAGuu--GUUGua-------AGugCGACG- -5'
27122 3' -49.4 NC_005832.1 + 77079 0.67 0.985794
Target:  5'- -gCC-GGU--GCGGCcgUCGCGCUGUa -3'
miRNA:   3'- caGGaCCAguUGUUGuaAGUGCGACG- -5'
27122 3' -49.4 NC_005832.1 + 42578 0.67 0.980454
Target:  5'- aUCCUGGcCGgagaaaucuuucuucACGGCGgagACGCUGCg -3'
miRNA:   3'- cAGGACCaGU---------------UGUUGUaagUGCGACG- -5'
27122 3' -49.4 NC_005832.1 + 6112 0.68 0.974312
Target:  5'- -gCCUGccUCAugGAgGUUCGCgGCUGCg -3'
miRNA:   3'- caGGACc-AGUugUUgUAAGUG-CGACG- -5'
27122 3' -49.4 NC_005832.1 + 47538 0.69 0.957228
Target:  5'- cUCCUGGgCAGCAACAaggaucccgUCAcCGCcGCa -3'
miRNA:   3'- cAGGACCaGUUGUUGUa--------AGU-GCGaCG- -5'
27122 3' -49.4 NC_005832.1 + 89709 0.72 0.839852
Target:  5'- -gCCUGGUCGGCGuccuugaugcccgGCAg-CGCGUUGCa -3'
miRNA:   3'- caGGACCAGUUGU-------------UGUaaGUGCGACG- -5'
27122 3' -49.4 NC_005832.1 + 48286 0.76 0.646264
Target:  5'- cGUCCUGGUCAAggcCGGC-UUCGC-CUGCc -3'
miRNA:   3'- -CAGGACCAGUU---GUUGuAAGUGcGACG- -5'
27122 3' -49.4 NC_005832.1 + 91995 1.14 0.003806
Target:  5'- cGUCCUGGUCAACAACAUUCACGCUGCg -3'
miRNA:   3'- -CAGGACCAGUUGUUGUAAGUGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.