miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27123 3' -54.8 NC_005832.1 + 6462 0.66 0.885822
Target:  5'- cGCGGuGUGCUCCaagaUCCuggaGGCG-GAGGCg -3'
miRNA:   3'- aCGUU-UACGAGG----AGG----CUGCuCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 32716 0.66 0.878518
Target:  5'- cGUAccAccGcCUCgUCCGGgGAGAGGCUg -3'
miRNA:   3'- aCGU--UuaC-GAGgAGGCUgCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 10820 0.66 0.877774
Target:  5'- gGC-AGUGCUCC-CUGGCGgucaugccggacaGGAGGUg -3'
miRNA:   3'- aCGuUUACGAGGaGGCUGC-------------UCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 15045 0.66 0.870975
Target:  5'- gGCGu-UGuCUCCUCCGGCcAGgcAGGCg -3'
miRNA:   3'- aCGUuuAC-GAGGAGGCUGcUC--UCCGa -5'
27123 3' -54.8 NC_005832.1 + 32890 0.66 0.870208
Target:  5'- aUGCAccacucgucuaccAcgGCgUCCUCaGcCGAGAGGCUa -3'
miRNA:   3'- -ACGU-------------UuaCG-AGGAGgCuGCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 47911 0.66 0.855198
Target:  5'- gGCGGA-GgUCCUggCCGA-GAGGGGCUa -3'
miRNA:   3'- aCGUUUaCgAGGA--GGCUgCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 75612 0.67 0.821076
Target:  5'- cGCAGuGUGCugccugUCCUCCGucaaccuUGAGAGGUa -3'
miRNA:   3'- aCGUU-UACG------AGGAGGCu------GCUCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 27873 0.67 0.802863
Target:  5'- gGCAGGcccUGgaCCUCCuuaggcGCGAGGGGCa -3'
miRNA:   3'- aCGUUU---ACgaGGAGGc-----UGCUCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 54540 0.68 0.793499
Target:  5'- cGacaGGAUGCUCCUcaggcCCGACGuaaAGuGGCUg -3'
miRNA:   3'- aCg--UUUACGAGGA-----GGCUGC---UCuCCGA- -5'
27123 3' -54.8 NC_005832.1 + 5567 0.68 0.793499
Target:  5'- gUGCAcagGC-CCUCCGAguGGAGGCc -3'
miRNA:   3'- -ACGUuuaCGaGGAGGCUgcUCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 7289 0.68 0.754565
Target:  5'- cGCGGcgGCggUCCugugUCCGG-GAGAGGCUg -3'
miRNA:   3'- aCGUUuaCG--AGG----AGGCUgCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 32623 0.69 0.692856
Target:  5'- cGCAccAccGcCUCgUCCGGgGAGAGGCUg -3'
miRNA:   3'- aCGU--UuaC-GAGgAGGCUgCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 32808 0.7 0.671737
Target:  5'- cUGCAccAccGcCUCgUCCGGgGAGAGGCUg -3'
miRNA:   3'- -ACGU--UuaC-GAGgAGGCUgCUCUCCGA- -5'
27123 3' -54.8 NC_005832.1 + 93610 0.7 0.661119
Target:  5'- aGCGAucAUGCUCagggCUCCGGCGuGGAGGgUg -3'
miRNA:   3'- aCGUU--UACGAG----GAGGCUGC-UCUCCgA- -5'
27123 3' -54.8 NC_005832.1 + 98405 0.71 0.61849
Target:  5'- aGCGucuguccuUGcCUCUgCCGACGGGAGGCa -3'
miRNA:   3'- aCGUuu------AC-GAGGaGGCUGCUCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 7354 0.72 0.551905
Target:  5'- cGCAcgGGUGUUCCUCCGcucccuucaggauaACG-GAGGCg -3'
miRNA:   3'- aCGU--UUACGAGGAGGC--------------UGCuCUCCGa -5'
27123 3' -54.8 NC_005832.1 + 92211 1.07 0.002834
Target:  5'- uUGCAAAUGCUCCUCCGACGAGAGGCUc -3'
miRNA:   3'- -ACGUUUACGAGGAGGCUGCUCUCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.