Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27123 | 3' | -54.8 | NC_005832.1 | + | 5567 | 0.68 | 0.793499 |
Target: 5'- gUGCAcagGC-CCUCCGAguGGAGGCc -3' miRNA: 3'- -ACGUuuaCGaGGAGGCUgcUCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 6462 | 0.66 | 0.885822 |
Target: 5'- cGCGGuGUGCUCCaagaUCCuggaGGCG-GAGGCg -3' miRNA: 3'- aCGUU-UACGAGG----AGG----CUGCuCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 7289 | 0.68 | 0.754565 |
Target: 5'- cGCGGcgGCggUCCugugUCCGG-GAGAGGCUg -3' miRNA: 3'- aCGUUuaCG--AGG----AGGCUgCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 7354 | 0.72 | 0.551905 |
Target: 5'- cGCAcgGGUGUUCCUCCGcucccuucaggauaACG-GAGGCg -3' miRNA: 3'- aCGU--UUACGAGGAGGC--------------UGCuCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 10820 | 0.66 | 0.877774 |
Target: 5'- gGC-AGUGCUCC-CUGGCGgucaugccggacaGGAGGUg -3' miRNA: 3'- aCGuUUACGAGGaGGCUGC-------------UCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 15045 | 0.66 | 0.870975 |
Target: 5'- gGCGu-UGuCUCCUCCGGCcAGgcAGGCg -3' miRNA: 3'- aCGUuuAC-GAGGAGGCUGcUC--UCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 27873 | 0.67 | 0.802863 |
Target: 5'- gGCAGGcccUGgaCCUCCuuaggcGCGAGGGGCa -3' miRNA: 3'- aCGUUU---ACgaGGAGGc-----UGCUCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 32623 | 0.69 | 0.692856 |
Target: 5'- cGCAccAccGcCUCgUCCGGgGAGAGGCUg -3' miRNA: 3'- aCGU--UuaC-GAGgAGGCUgCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 32716 | 0.66 | 0.878518 |
Target: 5'- cGUAccAccGcCUCgUCCGGgGAGAGGCUg -3' miRNA: 3'- aCGU--UuaC-GAGgAGGCUgCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 32808 | 0.7 | 0.671737 |
Target: 5'- cUGCAccAccGcCUCgUCCGGgGAGAGGCUg -3' miRNA: 3'- -ACGU--UuaC-GAGgAGGCUgCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 32890 | 0.66 | 0.870208 |
Target: 5'- aUGCAccacucgucuaccAcgGCgUCCUCaGcCGAGAGGCUa -3' miRNA: 3'- -ACGU-------------UuaCG-AGGAGgCuGCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 47911 | 0.66 | 0.855198 |
Target: 5'- gGCGGA-GgUCCUggCCGA-GAGGGGCUa -3' miRNA: 3'- aCGUUUaCgAGGA--GGCUgCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 54540 | 0.68 | 0.793499 |
Target: 5'- cGacaGGAUGCUCCUcaggcCCGACGuaaAGuGGCUg -3' miRNA: 3'- aCg--UUUACGAGGA-----GGCUGC---UCuCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 75612 | 0.67 | 0.821076 |
Target: 5'- cGCAGuGUGCugccugUCCUCCGucaaccuUGAGAGGUa -3' miRNA: 3'- aCGUU-UACG------AGGAGGCu------GCUCUCCGa -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 92211 | 1.07 | 0.002834 |
Target: 5'- uUGCAAAUGCUCCUCCGACGAGAGGCUc -3' miRNA: 3'- -ACGUUUACGAGGAGGCUGCUCUCCGA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 93610 | 0.7 | 0.661119 |
Target: 5'- aGCGAucAUGCUCagggCUCCGGCGuGGAGGgUg -3' miRNA: 3'- aCGUU--UACGAG----GAGGCUGC-UCUCCgA- -5' |
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27123 | 3' | -54.8 | NC_005832.1 | + | 98405 | 0.71 | 0.61849 |
Target: 5'- aGCGucuguccuUGcCUCUgCCGACGGGAGGCa -3' miRNA: 3'- aCGUuu------AC-GAGGaGGCUGCUCUCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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