miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27123 5' -55.7 NC_005832.1 + 43710 0.66 0.840153
Target:  5'- -cAGUaUCUCagaGGCGGGAGGgucGGCg -3'
miRNA:   3'- ucUCGgAGAGa--CCGCCCUCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 90924 0.66 0.840153
Target:  5'- aGGAGCCUCaUCUcGGCc-GAGGgcgGGCc -3'
miRNA:   3'- -UCUCGGAG-AGA-CCGccCUCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 81307 0.67 0.786321
Target:  5'- cGAGCUcggUCUCUGGCaGGGGccacGGCa -3'
miRNA:   3'- uCUCGG---AGAGACCGcCCUCcaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 67139 0.67 0.767095
Target:  5'- cAGGGCC-CUCgcaGCGGGAcGUUUGGa -3'
miRNA:   3'- -UCUCGGaGAGac-CGCCCUcCAAAUCg -5'
27123 5' -55.7 NC_005832.1 + 76392 0.67 0.76612
Target:  5'- aAGGGCCUCUacuacuugaggacCUGcGcCGGGAGGaccGGCc -3'
miRNA:   3'- -UCUCGGAGA-------------GAC-C-GCCCUCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 12617 0.69 0.664904
Target:  5'- gGGAGauaCUCUCUGGCGGGGacauggAGUc -3'
miRNA:   3'- -UCUCg--GAGAGACCGCCCUccaaa-UCG- -5'
27123 5' -55.7 NC_005832.1 + 53996 0.69 0.653314
Target:  5'- cGGAGCCccUCUCccuggcggugccgUGaGCGGGAGGUgguuuGCc -3'
miRNA:   3'- -UCUCGG--AGAG-------------AC-CGCCCUCCAaau--CG- -5'
27123 5' -55.7 NC_005832.1 + 71152 0.7 0.622684
Target:  5'- gAGAGgCUCUCcGGCGGGcauaaacagAGGg--GGCc -3'
miRNA:   3'- -UCUCgGAGAGaCCGCCC---------UCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 66169 0.7 0.622684
Target:  5'- uGAaCCUCUUggGGUGGGAGGgacAGCu -3'
miRNA:   3'- uCUcGGAGAGa-CCGCCCUCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 54357 0.73 0.431492
Target:  5'- gGGGGCCUUUUUcGGCgGGGAGGac-AGCa -3'
miRNA:   3'- -UCUCGGAGAGA-CCG-CCCUCCaaaUCG- -5'
27123 5' -55.7 NC_005832.1 + 92177 1.12 0.001108
Target:  5'- cAGAGCCUCUCUGGCGGGAGGUUUAGCg -3'
miRNA:   3'- -UCUCGGAGAGACCGCCCUCCAAAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.