miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27124 3' -48.5 NC_005832.1 + 43474 0.66 0.996802
Target:  5'- ---gACCCcgCUCcauccUCGUcCCCGUCGGAc -3'
miRNA:   3'- gaaaUGGGa-GAG-----AGUAaGGGUAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 47839 0.66 0.996802
Target:  5'- ---gACCCUCUUggguuUCuUUCCCGgccUCAGGa -3'
miRNA:   3'- gaaaUGGGAGAG-----AGuAAGGGU---AGUCU- -5'
27124 3' -48.5 NC_005832.1 + 74725 0.67 0.993858
Target:  5'- ---gACCCUCUUUag--CUCGUCGGAc -3'
miRNA:   3'- gaaaUGGGAGAGAguaaGGGUAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 76918 0.67 0.993858
Target:  5'- --cUGCCCgauaCUCggcuucCAggCCCGUCAGAc -3'
miRNA:   3'- gaaAUGGGa---GAGa-----GUaaGGGUAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 10906 0.67 0.993858
Target:  5'- ---gACCCUCUCggccagCUCGUCGGGc -3'
miRNA:   3'- gaaaUGGGAGAGaguaa-GGGUAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 41524 0.67 0.991726
Target:  5'- --cUGCCCUCUCgaCGUUUUCGUCGu- -3'
miRNA:   3'- gaaAUGGGAGAGa-GUAAGGGUAGUcu -5'
27124 3' -48.5 NC_005832.1 + 8176 0.67 0.991726
Target:  5'- --cUGCCCcUUCUCAUcauccugUCCGUCAGGa -3'
miRNA:   3'- gaaAUGGGaGAGAGUAa------GGGUAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 96722 0.68 0.985735
Target:  5'- uCUUUACCCUgaCUgCGUcaUCCC-UCAGGg -3'
miRNA:   3'- -GAAAUGGGAgaGA-GUA--AGGGuAGUCU- -5'
27124 3' -48.5 NC_005832.1 + 47358 0.69 0.967982
Target:  5'- cCUUUACCCUCUUUa---CCCAggggcagCAGAu -3'
miRNA:   3'- -GAAAUGGGAGAGAguaaGGGUa------GUCU- -5'
27124 3' -48.5 NC_005832.1 + 15505 0.7 0.96084
Target:  5'- ---aACUCUCUCUCGUUCUUGaggCAGAu -3'
miRNA:   3'- gaaaUGGGAGAGAGUAAGGGUa--GUCU- -5'
27124 3' -48.5 NC_005832.1 + 46597 0.74 0.830185
Target:  5'- cCUUUuucGCCCUCUUUC--UCCCGUCgAGAa -3'
miRNA:   3'- -GAAA---UGGGAGAGAGuaAGGGUAG-UCU- -5'
27124 3' -48.5 NC_005832.1 + 93129 1.1 0.008504
Target:  5'- uCUUUACCCUCUCUCAUUCCCAUCAGAg -3'
miRNA:   3'- -GAAAUGGGAGAGAGUAAGGGUAGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.