miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 79688 0.72 0.217238
Target:  5'- uGGGGAGcAGGuuGGCCCUgagGCCCGGGUa -3'
miRNA:   3'- -CUCCUCcUCUu-CCGGGG---UGGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 79981 0.67 0.4212
Target:  5'- aGGGAGGuGggGGaCCCCaacgucccguuuaACCUccucaaguacuuuaGGGCCc -3'
miRNA:   3'- cUCCUCCuCuuCC-GGGG-------------UGGG--------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 80348 0.66 0.4968
Target:  5'- -uGGGGGAGAAGGUCaguaUGCCguuccucaCGGGUCc -3'
miRNA:   3'- cuCCUCCUCUUCCGGg---GUGG--------GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 80562 0.66 0.506215
Target:  5'- cAGGGGGGGcauGGGCCaaguCACCaGGGUa -3'
miRNA:   3'- cUCCUCCUCu--UCCGGg---GUGGgCCCGg -5'
27126 3' -63.4 NC_005832.1 + 83410 0.68 0.374824
Target:  5'- aGAGGGccuGGAGcucuuuGGCCCCGCCaccucaaGGGUa -3'
miRNA:   3'- -CUCCU---CCUCuu----CCGGGGUGGg------CCCGg -5'
27126 3' -63.4 NC_005832.1 + 86979 0.67 0.450991
Target:  5'- -cGGAGGcgucaaAGAAGGCCCUgACCaUGaGGCUg -3'
miRNA:   3'- cuCCUCC------UCUUCCGGGG-UGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 87216 0.67 0.450992
Target:  5'- uGAGGAGaguGAGGuGGGCCaCCAgCCUGGuGUCg -3'
miRNA:   3'- -CUCCUC---CUCU-UCCGG-GGU-GGGCC-CGG- -5'
27126 3' -63.4 NC_005832.1 + 87584 0.68 0.382849
Target:  5'- cGAGGuGGGAGAcgucGGCCUUugCCGccggguccauGGCCa -3'
miRNA:   3'- -CUCC-UCCUCUu---CCGGGGugGGC----------CCGG- -5'
27126 3' -63.4 NC_005832.1 + 90775 0.69 0.314817
Target:  5'- aAGGAGccuccuGAGGGgCCCGCCCucGGCCg -3'
miRNA:   3'- cUCCUCcu----CUUCCgGGGUGGGc-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 93839 0.72 0.212089
Target:  5'- uGGGGGGAuuGGGCCCgGgUgGGGCCu -3'
miRNA:   3'- cUCCUCCUcuUCCGGGgUgGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 93982 1.09 0.000395
Target:  5'- gGAGGAGGAGAAGGCCCCACCCGGGCCc -3'
miRNA:   3'- -CUCCUCCUCUUCCGGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 94279 0.73 0.192066
Target:  5'- cGGGGAgcgcgugGGAGAAGGCCgCAgagaCCGuGGCCa -3'
miRNA:   3'- -CUCCU-------CCUCUUCCGGgGUg---GGC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 95609 0.68 0.374824
Target:  5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3'
miRNA:   3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 96023 0.68 0.374824
Target:  5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3'
miRNA:   3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 97210 0.67 0.424644
Target:  5'- uGAGGucGAcAGGGCCU--CCUGGGCCu -3'
miRNA:   3'- -CUCCucCUcUUCCGGGguGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 103965 0.67 0.399237
Target:  5'- --cGAGGAGAugguGGCCCUGa--GGGCCg -3'
miRNA:   3'- cucCUCCUCUu---CCGGGGUgggCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.