miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 97210 0.67 0.424644
Target:  5'- uGAGGucGAcAGGGCCU--CCUGGGCCu -3'
miRNA:   3'- -CUCCucCUcUUCCGGGguGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 79981 0.67 0.4212
Target:  5'- aGGGAGGuGggGGaCCCCaacgucccguuuaACCUccucaaguacuuuaGGGCCc -3'
miRNA:   3'- cUCCUCCuCuuCC-GGGG-------------UGGG--------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 11887 0.67 0.416067
Target:  5'- -cGGcGGuGAGGGCUCCGucuCCCauagcGGGCCg -3'
miRNA:   3'- cuCCuCCuCUUCCGGGGU---GGG-----CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 26449 0.67 0.416067
Target:  5'- cAGGAccuGGGGAgugucGGGCagCCACCCGgcGGCCc -3'
miRNA:   3'- cUCCU---CCUCU-----UCCGg-GGUGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 38435 0.67 0.416067
Target:  5'- ---aGGGAGAuGGacugcuccaCCCUGCCCGGGCUa -3'
miRNA:   3'- cuccUCCUCUuCC---------GGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 75143 0.67 0.406757
Target:  5'- aGAGGAGaaaacaaGAGAugggcAGGCCCgACCCGGuGaCa -3'
miRNA:   3'- -CUCCUC-------CUCU-----UCCGGGgUGGGCC-CgG- -5'
27126 3' -63.4 NC_005832.1 + 103965 0.67 0.399237
Target:  5'- --cGAGGAGAugguGGCCCUGa--GGGCCg -3'
miRNA:   3'- cucCUCCUCUu---CCGGGGUgggCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 5712 0.67 0.399237
Target:  5'- -uGGuccccGuGAGAGGGCCuCCACUCggaGGGCCu -3'
miRNA:   3'- cuCCu----C-CUCUUCCGG-GGUGGG---CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 39772 0.67 0.398407
Target:  5'- uGAGGGGGucuaGAGGCCCC-CCggagcggUGGGUCc -3'
miRNA:   3'- -CUCCUCCuc--UUCCGGGGuGG-------GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 38587 0.68 0.382849
Target:  5'- aAGGAGG-GAccuGGCUa-GCCCGGGCa -3'
miRNA:   3'- cUCCUCCuCUu--CCGGggUGGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 87584 0.68 0.382849
Target:  5'- cGAGGuGGGAGAcgucGGCCUUugCCGccggguccauGGCCa -3'
miRNA:   3'- -CUCC-UCCUCUu---CCGGGGugGGC----------CCGG- -5'
27126 3' -63.4 NC_005832.1 + 11009 0.68 0.382041
Target:  5'- gGGGGAGGgugagcuaccucaAGGccgccAGGCCCgACgCGGGUCu -3'
miRNA:   3'- -CUCCUCC-------------UCU-----UCCGGGgUGgGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 56616 0.68 0.374824
Target:  5'- aGAGG-GGAGAugccaAGGCCUCggGCCUGGaCCu -3'
miRNA:   3'- -CUCCuCCUCU-----UCCGGGG--UGGGCCcGG- -5'
27126 3' -63.4 NC_005832.1 + 83410 0.68 0.374824
Target:  5'- aGAGGGccuGGAGcucuuuGGCCCCGCCaccucaaGGGUa -3'
miRNA:   3'- -CUCCU---CCUCuu----CCGGGGUGGg------CCCGg -5'
27126 3' -63.4 NC_005832.1 + 95609 0.68 0.374824
Target:  5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3'
miRNA:   3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 96023 0.68 0.374824
Target:  5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3'
miRNA:   3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 52292 0.68 0.359119
Target:  5'- aGAGGgccugugguaAGGAGAAGGCCCaCGCCauguggaGGaCCc -3'
miRNA:   3'- -CUCC----------UCCUCUUCCGGG-GUGGg------CCcGG- -5'
27126 3' -63.4 NC_005832.1 + 24411 0.68 0.359119
Target:  5'- cGAGGAGGuuaAGGuacaGGGUCCCGCCU--GCCa -3'
miRNA:   3'- -CUCCUCC---UCU----UCCGGGGUGGGccCGG- -5'
27126 3' -63.4 NC_005832.1 + 27997 0.68 0.351441
Target:  5'- aAGGAGGuccAGGgCCUGCCCGGccGCCu -3'
miRNA:   3'- cUCCUCCucuUCCgGGGUGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 52362 0.68 0.351441
Target:  5'- aGGGGAGGAGGGucguGGCuCCUGgCCGuGGCa -3'
miRNA:   3'- -CUCCUCCUCUU----CCG-GGGUgGGC-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.