miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 5' -48.5 NC_005832.1 + 97357 0.73 0.868689
Target:  5'- uCCAAGCUGGAgcuccUCAACgucAAGCCCGAc -3'
miRNA:   3'- -GGUUUGGCCU-----AGUUGgu-UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 96570 0.66 0.997436
Target:  5'- gCAAGCa-GAUC-GCCAGAGCCCuGAg -3'
miRNA:   3'- gGUUUGgcCUAGuUGGUUUUGGG-CUa -5'
27126 5' -48.5 NC_005832.1 + 76093 0.66 0.997436
Target:  5'- aCCAGGCCG--UCAACCccuaccucaaaaGGGACCUGGa -3'
miRNA:   3'- -GGUUUGGCcuAGUUGG------------UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 13720 0.66 0.997436
Target:  5'- cCCAGACaCGGG-CAgggcGCUGGAGCUCGAc -3'
miRNA:   3'- -GGUUUG-GCCUaGU----UGGUUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 55486 0.66 0.996311
Target:  5'- gUggGCCGGAa-AACCGuccccaccgccggAGACCCGGUg -3'
miRNA:   3'- gGuuUGGCCUagUUGGU-------------UUUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 89607 0.66 0.995991
Target:  5'- uCCGugucGGCCGGAaagacguacuuggagUCGGCCGGGGCCgUGGUg -3'
miRNA:   3'- -GGU----UUGGCCU---------------AGUUGGUUUUGG-GCUA- -5'
27126 5' -48.5 NC_005832.1 + 96489 0.67 0.99316
Target:  5'- gCCuguCCaGGUCAGCCAgGGACCUGGa -3'
miRNA:   3'- -GGuuuGGcCUAGUUGGU-UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 75293 0.67 0.990861
Target:  5'- cCCcGACCGGAgacgUCAACagaaAGAAUCUGAa -3'
miRNA:   3'- -GGuUUGGCCU----AGUUGg---UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 69951 0.69 0.972292
Target:  5'- uCCAAGCCGGAgauaGACCAGcuUCCa-- -3'
miRNA:   3'- -GGUUUGGCCUag--UUGGUUuuGGGcua -5'
27126 5' -48.5 NC_005832.1 + 69736 0.69 0.972292
Target:  5'- uCCAAGCCGGAgauaGACCAGcuUCCa-- -3'
miRNA:   3'- -GGUUUGGCCUag--UUGGUUuuGGGcua -5'
27126 5' -48.5 NC_005832.1 + 94092 0.69 0.9692
Target:  5'- cCCGAACCGucgaGGgCGAAGCCCGAa -3'
miRNA:   3'- -GGUUUGGCcuagUUgGUUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 48731 0.71 0.940522
Target:  5'- aCCAGGCCGuGUCGACUugcauGGCCUGGUu -3'
miRNA:   3'- -GGUUUGGCcUAGUUGGuu---UUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 40823 0.71 0.940522
Target:  5'- gCCAGGCCGGAcCugggAGCCAcccugccguagAGGCCCGGg -3'
miRNA:   3'- -GGUUUGGCCUaG----UUGGU-----------UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 88366 0.73 0.876547
Target:  5'- uCCGuAACCGGAaCuGCCAAGACCCu-- -3'
miRNA:   3'- -GGU-UUGGCCUaGuUGGUUUUGGGcua -5'
27126 5' -48.5 NC_005832.1 + 67817 0.69 0.977793
Target:  5'- cCCAGGCCgaguGGAUCGccACCGgguccGAACCCGc- -3'
miRNA:   3'- -GGUUUGG----CCUAGU--UGGU-----UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 91430 0.69 0.977793
Target:  5'- gCCAAGCUGGAcgUGGCCAggcagaggAAGCCCGc- -3'
miRNA:   3'- -GGUUUGGCCUa-GUUGGU--------UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 39539 0.69 0.975153
Target:  5'- aCCGAugucACCGGAUgGACCAAAggguccAUCUGGUu -3'
miRNA:   3'- -GGUU----UGGCCUAgUUGGUUU------UGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 14329 0.69 0.9692
Target:  5'- uCCAAAcgcuguCCGGAgucuaUCGACCGu--CCCGAUg -3'
miRNA:   3'- -GGUUU------GGCCU-----AGUUGGUuuuGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 95919 0.71 0.929919
Target:  5'- gCAAGCCcGAgggCAGCCA--GCCCGAg -3'
miRNA:   3'- gGUUUGGcCUa--GUUGGUuuUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 93762 0.66 0.997436
Target:  5'- gCAAAcCCGGcUCAcacccuccacGCCGGAGCCCuGAg -3'
miRNA:   3'- gGUUU-GGCCuAGU----------UGGUUUUGGG-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.