miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 5' -48.5 NC_005832.1 + 91430 0.69 0.977793
Target:  5'- gCCAAGCUGGAcgUGGCCAggcagaggAAGCCCGc- -3'
miRNA:   3'- -GGUUUGGCCUa-GUUGGU--------UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 39539 0.69 0.975153
Target:  5'- aCCGAugucACCGGAUgGACCAAAggguccAUCUGGUu -3'
miRNA:   3'- -GGUU----UGGCCUAgUUGGUUU------UGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 69736 0.69 0.972292
Target:  5'- uCCAAGCCGGAgauaGACCAGcuUCCa-- -3'
miRNA:   3'- -GGUUUGGCCUag--UUGGUUuuGGGcua -5'
27126 5' -48.5 NC_005832.1 + 69951 0.69 0.972292
Target:  5'- uCCAAGCCGGAgauaGACCAGcuUCCa-- -3'
miRNA:   3'- -GGUUUGGCCUag--UUGGUUuuGGGcua -5'
27126 5' -48.5 NC_005832.1 + 14329 0.69 0.9692
Target:  5'- uCCAAAcgcuguCCGGAgucuaUCGACCGu--CCCGAUg -3'
miRNA:   3'- -GGUUU------GGCCU-----AGUUGGUuuuGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 94092 0.69 0.9692
Target:  5'- cCCGAACCGucgaGGgCGAAGCCCGAa -3'
miRNA:   3'- -GGUUUGGCcuagUUgGUUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 48731 0.71 0.940522
Target:  5'- aCCAGGCCGuGUCGACUugcauGGCCUGGUu -3'
miRNA:   3'- -GGUUUGGCcUAGUUGGuu---UUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 40823 0.71 0.940522
Target:  5'- gCCAGGCCGGAcCugggAGCCAcccugccguagAGGCCCGGg -3'
miRNA:   3'- -GGUUUGGCCUaG----UUGGU-----------UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 95919 0.71 0.929919
Target:  5'- gCAAGCCcGAgggCAGCCA--GCCCGAg -3'
miRNA:   3'- gGUUUGGcCUa--GUUGGUuuUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 88366 0.73 0.876547
Target:  5'- uCCGuAACCGGAaCuGCCAAGACCCu-- -3'
miRNA:   3'- -GGU-UUGGCCUaGuUGGUUUUGGGcua -5'
27126 5' -48.5 NC_005832.1 + 97357 0.73 0.868689
Target:  5'- uCCAAGCUGGAgcuccUCAACgucAAGCCCGAc -3'
miRNA:   3'- -GGUUUGGCCU-----AGUUGgu-UUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 93948 1.08 0.01242
Target:  5'- cCCAAACCGGAUCAACCAAAACCCGAUc -3'
miRNA:   3'- -GGUUUGGCCUAGUUGGUUUUGGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.