miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27127 3' -53 NC_005832.1 + 57455 0.66 0.944038
Target:  5'- cGCCcCAGAaGUCACGGAGguUGUgGCCUa -3'
miRNA:   3'- -CGGcGUCUcCAGUGUUUC--ACGaUGGA- -5'
27127 3' -53 NC_005832.1 + 97122 0.66 0.944038
Target:  5'- cGCCGCGGuGGcCcugaggGCAAAG-GCUGCg- -3'
miRNA:   3'- -CGGCGUCuCCaG------UGUUUCaCGAUGga -5'
27127 3' -53 NC_005832.1 + 4574 0.66 0.944038
Target:  5'- gGUCGUGGAaGUCACcAAGUcCUGCCUc -3'
miRNA:   3'- -CGGCGUCUcCAGUGuUUCAcGAUGGA- -5'
27127 3' -53 NC_005832.1 + 62401 0.66 0.939183
Target:  5'- gGCCGCuGAuguuuGGUCACGGAuccGCaUGCCUa -3'
miRNA:   3'- -CGGCGuCU-----CCAGUGUUUca-CG-AUGGA- -5'
27127 3' -53 NC_005832.1 + 18851 0.66 0.934063
Target:  5'- gGCaaaAGAGGUCGCAAAGgaGCUGUCUg -3'
miRNA:   3'- -CGgcgUCUCCAGUGUUUCa-CGAUGGA- -5'
27127 3' -53 NC_005832.1 + 1330 0.66 0.934063
Target:  5'- aCCGCGGAGGUCGCcaug-GCcuucucGCCUc -3'
miRNA:   3'- cGGCGUCUCCAGUGuuucaCGa-----UGGA- -5'
27127 3' -53 NC_005832.1 + 76321 0.66 0.92868
Target:  5'- aGUCGgGGAGGgcgGCAAuGUGCUGCa- -3'
miRNA:   3'- -CGGCgUCUCCag-UGUUuCACGAUGga -5'
27127 3' -53 NC_005832.1 + 24834 0.66 0.923032
Target:  5'- gGgCGCAGgcuuuGGG-CACAGAGUGUgUACCg -3'
miRNA:   3'- -CgGCGUC-----UCCaGUGUUUCACG-AUGGa -5'
27127 3' -53 NC_005832.1 + 103998 0.66 0.923032
Target:  5'- cGCCGUGGGGGUagacaACAuggccuGUGCccACCUg -3'
miRNA:   3'- -CGGCGUCUCCAg----UGUuu----CACGa-UGGA- -5'
27127 3' -53 NC_005832.1 + 64308 0.67 0.913444
Target:  5'- cGCCGUgcuguuuaaggugcgAGAGGUCGUAAAG-GCgGCCg -3'
miRNA:   3'- -CGGCG---------------UCUCCAGUGUUUCaCGaUGGa -5'
27127 3' -53 NC_005832.1 + 32436 0.67 0.910942
Target:  5'- cGCUcCAGAGGcCGCGAGGagGCagUACCUg -3'
miRNA:   3'- -CGGcGUCUCCaGUGUUUCa-CG--AUGGA- -5'
27127 3' -53 NC_005832.1 + 2640 0.68 0.876191
Target:  5'- gGCCGuCGGGGGcuccCACAAAGUGagcGCCc -3'
miRNA:   3'- -CGGC-GUCUCCa---GUGUUUCACga-UGGa -5'
27127 3' -53 NC_005832.1 + 90401 0.68 0.868496
Target:  5'- -aCGCgaGGAGGcUCGCAGAGUGCU-UCg -3'
miRNA:   3'- cgGCG--UCUCC-AGUGUUUCACGAuGGa -5'
27127 3' -53 NC_005832.1 + 98423 0.68 0.860566
Target:  5'- uGCCGacgGGAGG-CA-AGAGUGCUGCUg -3'
miRNA:   3'- -CGGCg--UCUCCaGUgUUUCACGAUGGa -5'
27127 3' -53 NC_005832.1 + 32815 0.68 0.860566
Target:  5'- aCCGCcucguccggggAGAGG-CugGAGGUGuCUGCCg -3'
miRNA:   3'- cGGCG-----------UCUCCaGugUUUCAC-GAUGGa -5'
27127 3' -53 NC_005832.1 + 32629 0.68 0.860566
Target:  5'- aCCGCcucguccggggAGAGG-CugGAGGUGuCUGCCg -3'
miRNA:   3'- cGGCG-----------UCUCCaGugUUUCAC-GAUGGa -5'
27127 3' -53 NC_005832.1 + 10957 0.68 0.852407
Target:  5'- uGCCGgGGAGGUgCugGGAG-GC-ACCg -3'
miRNA:   3'- -CGGCgUCUCCA-GugUUUCaCGaUGGa -5'
27127 3' -53 NC_005832.1 + 54008 0.68 0.844027
Target:  5'- aGCUGUGGAGGagGCuGGG-GCUGCCc -3'
miRNA:   3'- -CGGCGUCUCCagUGuUUCaCGAUGGa -5'
27127 3' -53 NC_005832.1 + 75705 0.69 0.808461
Target:  5'- gGCCGUggGGAGGUguaucucguUGCAAAGguUGCUGCCc -3'
miRNA:   3'- -CGGCG--UCUCCA---------GUGUUUC--ACGAUGGa -5'
27127 3' -53 NC_005832.1 + 23075 0.69 0.799103
Target:  5'- gGCUGCGG-GG-UACGAGGUGgUGCCc -3'
miRNA:   3'- -CGGCGUCuCCaGUGUUUCACgAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.