miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27127 5' -53.2 NC_005832.1 + 79108 0.66 0.936526
Target:  5'- aGGAGGuCCGUgaGGACguagGGCCUGaACc -3'
miRNA:   3'- -CCUCC-GGCG--UCUGaaa-UCGGAUcUGu -5'
27127 5' -53.2 NC_005832.1 + 16480 0.66 0.936526
Target:  5'- cGGcGGCCGCAGGa---GGCggAGGCGa -3'
miRNA:   3'- -CCuCCGGCGUCUgaaaUCGgaUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 9139 0.66 0.913961
Target:  5'- aGGAGGCCuGCAGGCgguuccuguUUUGGaCCcAGAa- -3'
miRNA:   3'- -CCUCCGG-CGUCUG---------AAAUC-GGaUCUgu -5'
27127 5' -53.2 NC_005832.1 + 87755 0.67 0.907662
Target:  5'- aGGAGaauguUUGCAGACUUUGGagaaggggaCCUGGACGa -3'
miRNA:   3'- -CCUCc----GGCGUCUGAAAUC---------GGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 62130 0.67 0.907662
Target:  5'- cGGAGGCUaCA-ACUcuuGCCUGGACGc -3'
miRNA:   3'- -CCUCCGGcGUcUGAaauCGGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 10849 0.67 0.907662
Target:  5'- cGGGGaCCGCAacauCUUUAGCaacuCUAGGCAg -3'
miRNA:   3'- cCUCC-GGCGUcu--GAAAUCG----GAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 74442 0.67 0.907662
Target:  5'- aGAGGCUaaaGUAccuGACg--GGCCUGGACGc -3'
miRNA:   3'- cCUCCGG---CGU---CUGaaaUCGGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 78884 0.67 0.907662
Target:  5'- -aGGGUgGCAGAgUcccugAGCCUGGACc -3'
miRNA:   3'- ccUCCGgCGUCUgAaa---UCGGAUCUGu -5'
27127 5' -53.2 NC_005832.1 + 27568 0.67 0.907662
Target:  5'- cGAGGCCuuccugggaGCGGugUgcacGGCCgUGGACGa -3'
miRNA:   3'- cCUCCGG---------CGUCugAaa--UCGG-AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 42231 0.67 0.894289
Target:  5'- aGGGuuGGUCGUAGGCg--GGCCUgaugugAGGCAc -3'
miRNA:   3'- -CCU--CCGGCGUCUGaaaUCGGA------UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 6231 0.67 0.887222
Target:  5'- aGGAGGgUGCAGGauagAGUCUGGAa- -3'
miRNA:   3'- -CCUCCgGCGUCUgaaaUCGGAUCUgu -5'
27127 5' -53.2 NC_005832.1 + 86431 0.67 0.879906
Target:  5'- aGGAGGCUGguGugg--AGCCUAaACAg -3'
miRNA:   3'- -CCUCCGGCguCugaaaUCGGAUcUGU- -5'
27127 5' -53.2 NC_005832.1 + 72309 0.67 0.879906
Target:  5'- aGGGGCCGCaaggAGACaauggGGUgUAGGCAu -3'
miRNA:   3'- cCUCCGGCG----UCUGaaa--UCGgAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 27861 0.67 0.879906
Target:  5'- aGGAGGCgGcCGGGCa--GGCCcUGGACc -3'
miRNA:   3'- -CCUCCGgC-GUCUGaaaUCGG-AUCUGu -5'
27127 5' -53.2 NC_005832.1 + 97145 0.68 0.867696
Target:  5'- aGGcuGCgGCAGACgccguggcaaagAGCCUGGACu -3'
miRNA:   3'- -CCucCGgCGUCUGaaa---------UCGGAUCUGu -5'
27127 5' -53.2 NC_005832.1 + 2662 0.68 0.864549
Target:  5'- aGGAGGgCCuGUGGACUaUGGCgaGGACc -3'
miRNA:   3'- -CCUCC-GG-CGUCUGAaAUCGgaUCUGu -5'
27127 5' -53.2 NC_005832.1 + 66679 0.68 0.84827
Target:  5'- aGGAucacGGCCGCcguGGACUUUGGgUcAGACGc -3'
miRNA:   3'- -CCU----CCGGCG---UCUGAAAUCgGaUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 72720 0.68 0.839801
Target:  5'- aGGGG-CGCGGACg--GGCCguUGGGCAa -3'
miRNA:   3'- cCUCCgGCGUCUGaaaUCGG--AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 98314 0.68 0.839801
Target:  5'- gGGAGGCCGaaaGGGCcucgGGUCaguUAGGCAa -3'
miRNA:   3'- -CCUCCGGCg--UCUGaaa-UCGG---AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 71169 0.68 0.831125
Target:  5'- aGAGGCCGuCAGGCcguccgAGCCcguccaaugGGACAa -3'
miRNA:   3'- cCUCCGGC-GUCUGaaa---UCGGa--------UCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.