miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27127 5' -53.2 NC_005832.1 + 74442 0.67 0.907662
Target:  5'- aGAGGCUaaaGUAccuGACg--GGCCUGGACGc -3'
miRNA:   3'- cCUCCGG---CGU---CUGaaaUCGGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 71169 0.68 0.831125
Target:  5'- aGAGGCCGuCAGGCcguccgAGCCcguccaaugGGACAa -3'
miRNA:   3'- cCUCCGGC-GUCUGaaa---UCGGa--------UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 98314 0.68 0.839801
Target:  5'- gGGAGGCCGaaaGGGCcucgGGUCaguUAGGCAa -3'
miRNA:   3'- -CCUCCGGCg--UCUGaaa-UCGG---AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 72720 0.68 0.839801
Target:  5'- aGGGG-CGCGGACg--GGCCguUGGGCAa -3'
miRNA:   3'- cCUCCgGCGUCUGaaaUCGG--AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 2662 0.68 0.864549
Target:  5'- aGGAGGgCCuGUGGACUaUGGCgaGGACc -3'
miRNA:   3'- -CCUCC-GG-CGUCUGAaAUCGgaUCUGu -5'
27127 5' -53.2 NC_005832.1 + 97145 0.68 0.867696
Target:  5'- aGGcuGCgGCAGACgccguggcaaagAGCCUGGACu -3'
miRNA:   3'- -CCucCGgCGUCUGaaa---------UCGGAUCUGu -5'
27127 5' -53.2 NC_005832.1 + 27861 0.67 0.879906
Target:  5'- aGGAGGCgGcCGGGCa--GGCCcUGGACc -3'
miRNA:   3'- -CCUCCGgC-GUCUGaaaUCGG-AUCUGu -5'
27127 5' -53.2 NC_005832.1 + 72309 0.67 0.879906
Target:  5'- aGGGGCCGCaaggAGACaauggGGUgUAGGCAu -3'
miRNA:   3'- cCUCCGGCG----UCUGaaa--UCGgAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 6231 0.67 0.887222
Target:  5'- aGGAGGgUGCAGGauagAGUCUGGAa- -3'
miRNA:   3'- -CCUCCgGCGUCUgaaaUCGGAUCUgu -5'
27127 5' -53.2 NC_005832.1 + 78784 0.69 0.822249
Target:  5'- cGGGGGCUGCAGuggu--GCCcggGGACGu -3'
miRNA:   3'- -CCUCCGGCGUCugaaauCGGa--UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 42306 0.69 0.812265
Target:  5'- gGGAGGCCGUggccauguguGGGCUggGGuCCUuuucgggAGACGa -3'
miRNA:   3'- -CCUCCGGCG----------UCUGAaaUC-GGA-------UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 70729 0.69 0.783965
Target:  5'- aGAGGCCGCcgcagccgcGGCUaUAGCCagagccaUAGACAa -3'
miRNA:   3'- cCUCCGGCGu--------CUGAaAUCGG-------AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 102096 0.75 0.452952
Target:  5'- uGGAGGCCGCcgAGGC---AGCCaUGGACGc -3'
miRNA:   3'- -CCUCCGGCG--UCUGaaaUCGG-AUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 82252 0.74 0.533314
Target:  5'- uGGAGGCUGguGcCUUUacAGCCgGGGCAc -3'
miRNA:   3'- -CCUCCGGCguCuGAAA--UCGGaUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 21080 0.73 0.596735
Target:  5'- aGGAGGCUGguGAUUgccggGGCCcguagGGACGc -3'
miRNA:   3'- -CCUCCGGCguCUGAaa---UCGGa----UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 51839 0.72 0.661156
Target:  5'- uGGAGGaugaCCGUGGACccgAGCUUGGGCAc -3'
miRNA:   3'- -CCUCC----GGCGUCUGaaaUCGGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 67049 0.71 0.70371
Target:  5'- -aGGGCCGCGGGCguaaagaGGCCUgaccuGGACGc -3'
miRNA:   3'- ccUCCGGCGUCUGaaa----UCGGA-----UCUGU- -5'
27127 5' -53.2 NC_005832.1 + 43142 0.7 0.744176
Target:  5'- gGGAGGCCGUgcuggccaccgucAGGCUgggaaagGGCCUgccGGGCu -3'
miRNA:   3'- -CCUCCGGCG-------------UCUGAaa-----UCGGA---UCUGu -5'
27127 5' -53.2 NC_005832.1 + 66606 0.7 0.75532
Target:  5'- aGGuccuGGCUGgaGGACUcgagGGCCUGGACGa -3'
miRNA:   3'- -CCu---CCGGCg-UCUGAaa--UCGGAUCUGU- -5'
27127 5' -53.2 NC_005832.1 + 67250 0.69 0.782028
Target:  5'- aGGGGGCUGCcucucuacccggugAGGCUgUGGCUgucgagGGACAg -3'
miRNA:   3'- -CCUCCGGCG--------------UCUGAaAUCGGa-----UCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.