miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27129 3' -52.5 NC_005832.1 + 10062 0.66 0.959762
Target:  5'- aCGUgUCCguGGAGcccgGUCcCCUGCCc -3'
miRNA:   3'- -GCAgAGGauCCUCuua-CAGaGGACGG- -5'
27129 3' -52.5 NC_005832.1 + 83701 0.66 0.955884
Target:  5'- aGUCUCCUcugAGGAGAAaGUC-CC--CCa -3'
miRNA:   3'- gCAGAGGA---UCCUCUUaCAGaGGacGG- -5'
27129 3' -52.5 NC_005832.1 + 106276 0.66 0.947385
Target:  5'- aGUCUUCUGaGAGAAaGUCUUCUGa- -3'
miRNA:   3'- gCAGAGGAUcCUCUUaCAGAGGACgg -5'
27129 3' -52.5 NC_005832.1 + 42024 0.67 0.932723
Target:  5'- -cUCUUCcGGGGGAGUGUC-CCU-CCg -3'
miRNA:   3'- gcAGAGGaUCCUCUUACAGaGGAcGG- -5'
27129 3' -52.5 NC_005832.1 + 10450 0.67 0.927317
Target:  5'- -cUUUCC-GGGAGua-GUCUCCcUGCCg -3'
miRNA:   3'- gcAGAGGaUCCUCuuaCAGAGG-ACGG- -5'
27129 3' -52.5 NC_005832.1 + 104202 0.67 0.927317
Target:  5'- cCGUCUCCcAGGaAGGAUGcgugaacCUCCU-CCa -3'
miRNA:   3'- -GCAGAGGaUCC-UCUUACa------GAGGAcGG- -5'
27129 3' -52.5 NC_005832.1 + 84040 0.68 0.915722
Target:  5'- aGUCUCCUGu--GAAUugcaaGUCUCCUGUg -3'
miRNA:   3'- gCAGAGGAUccuCUUA-----CAGAGGACGg -5'
27129 3' -52.5 NC_005832.1 + 84004 0.68 0.915722
Target:  5'- aGUCUCCUGu--GAAUugcaaGUCUCCUGUg -3'
miRNA:   3'- gCAGAGGAUccuCUUA-----CAGAGGACGg -5'
27129 3' -52.5 NC_005832.1 + 83968 0.68 0.915722
Target:  5'- aGUCUCCUGu--GAAUugcaaGUCUCCUGUg -3'
miRNA:   3'- gCAGAGGAUccuCUUA-----CAGAGGACGg -5'
27129 3' -52.5 NC_005832.1 + 52373 0.68 0.909536
Target:  5'- gCGUCgCCUccAGGGGAggagggucGUGgCUCCUGgCCg -3'
miRNA:   3'- -GCAGaGGA--UCCUCU--------UACaGAGGAC-GG- -5'
27129 3' -52.5 NC_005832.1 + 85997 0.69 0.87405
Target:  5'- -cUCUgCUAGGAGAAaucuuUGUCUCCUuuucuaguuuugcGCUa -3'
miRNA:   3'- gcAGAgGAUCCUCUU-----ACAGAGGA-------------CGG- -5'
27129 3' -52.5 NC_005832.1 + 70143 0.69 0.851096
Target:  5'- aGUCUCC-AGuGAGAAaGUCUCCaGUUa -3'
miRNA:   3'- gCAGAGGaUC-CUCUUaCAGAGGaCGG- -5'
27129 3' -52.5 NC_005832.1 + 69700 0.69 0.842749
Target:  5'- aGUCUCCcgcuGuGAGAAaGUCUCCagcaGCCa -3'
miRNA:   3'- gCAGAGGau--C-CUCUUaCAGAGGa---CGG- -5'
27129 3' -52.5 NC_005832.1 + 35116 0.7 0.834194
Target:  5'- cCGUCUCCcgcaaaGAGAAccagccUGUC-CCUGCCu -3'
miRNA:   3'- -GCAGAGGauc---CUCUU------ACAGaGGACGG- -5'
27129 3' -52.5 NC_005832.1 + 55624 0.7 0.834194
Target:  5'- gGUCUCCggcgguGGGGAcgGUUUUCcgGCCc -3'
miRNA:   3'- gCAGAGGau----CCUCUuaCAGAGGa-CGG- -5'
27129 3' -52.5 NC_005832.1 + 95643 0.72 0.728924
Target:  5'- -uUCUCCUAGGAGAcg--CUCCU-CCg -3'
miRNA:   3'- gcAGAGGAUCCUCUuacaGAGGAcGG- -5'
27129 3' -52.5 NC_005832.1 + 95733 0.73 0.676595
Target:  5'- gCGUUUCCaaacAGGAGAGcGUCUCCgGCa -3'
miRNA:   3'- -GCAGAGGa---UCCUCUUaCAGAGGaCGg -5'
27129 3' -52.5 NC_005832.1 + 10128 0.73 0.676595
Target:  5'- aGUCUauggaCCUGGGGG--UGUC-CCUGCCc -3'
miRNA:   3'- gCAGA-----GGAUCCUCuuACAGaGGACGG- -5'
27129 3' -52.5 NC_005832.1 + 69903 0.74 0.58491
Target:  5'- aGUCUCCUAGaaagucucccgcuguGAGAAaGUCUCCagcaGCCa -3'
miRNA:   3'- gCAGAGGAUC---------------CUCUUaCAGAGGa---CGG- -5'
27129 3' -52.5 NC_005832.1 + 69658 0.76 0.51812
Target:  5'- aGUCUCCcgcUGGGAGAAaGUCUCCUagaaaGUCu -3'
miRNA:   3'- gCAGAGG---AUCCUCUUaCAGAGGA-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.