miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27129 5' -52.5 NC_005832.1 + 42029 0.66 0.950974
Target:  5'- ---cCGGGGGAGUGUCccuccgaccCCGGCGGa- -3'
miRNA:   3'- guuuGUCCUCUCGCAGa--------GGCCGUUac -5'
27129 5' -52.5 NC_005832.1 + 41836 0.66 0.936786
Target:  5'- gCAAACccuGGGAGaAGC-UCaccCCGGCGAUGg -3'
miRNA:   3'- -GUUUG---UCCUC-UCGcAGa--GGCCGUUAC- -5'
27129 5' -52.5 NC_005832.1 + 90377 0.67 0.926008
Target:  5'- uCGAGCAGGAcGAguuucgGCGUCUgCGGggaCGAUGg -3'
miRNA:   3'- -GUUUGUCCU-CU------CGCAGAgGCC---GUUAC- -5'
27129 5' -52.5 NC_005832.1 + 42505 0.67 0.92022
Target:  5'- -cAugAGGAGGGCcgccaugCUCUGGUGGUGg -3'
miRNA:   3'- guUugUCCUCUCGca-----GAGGCCGUUAC- -5'
27129 5' -52.5 NC_005832.1 + 56125 0.67 0.92022
Target:  5'- -cGGCGGGugcaaaguacgAGAGCGUCUCCuggagcuugacGGCcGUGg -3'
miRNA:   3'- guUUGUCC-----------UCUCGCAGAGG-----------CCGuUAC- -5'
27129 5' -52.5 NC_005832.1 + 15951 0.67 0.919626
Target:  5'- -cGACAGGgccucuuGGAGCGccUCUCCcGGCAGc- -3'
miRNA:   3'- guUUGUCC-------UCUCGC--AGAGG-CCGUUac -5'
27129 5' -52.5 NC_005832.1 + 55635 0.68 0.887336
Target:  5'- --uAUAGGcaccGgGUCUCCGGCGGUGg -3'
miRNA:   3'- guuUGUCCucu-CgCAGAGGCCGUUAC- -5'
27129 5' -52.5 NC_005832.1 + 85533 0.68 0.879991
Target:  5'- uGAGCuuGGAGAgcGCGUCUUCGuCAAUGa -3'
miRNA:   3'- gUUUGu-CCUCU--CGCAGAGGCcGUUAC- -5'
27129 5' -52.5 NC_005832.1 + 92166 0.68 0.8724
Target:  5'- -uGGCGGGAGguuuAGCGUCaCCGGCuccaaGGUGg -3'
miRNA:   3'- guUUGUCCUC----UCGCAGaGGCCG-----UUAC- -5'
27129 5' -52.5 NC_005832.1 + 10430 0.69 0.848219
Target:  5'- gCGGugAGGAGGGCGaaccucUUUCCGGgAGUa -3'
miRNA:   3'- -GUUugUCCUCUCGC------AGAGGCCgUUAc -5'
27129 5' -52.5 NC_005832.1 + 54046 0.69 0.830994
Target:  5'- aCAAACAGGAGGGUG---CUGGCGAc- -3'
miRNA:   3'- -GUUUGUCCUCUCGCagaGGCCGUUac -5'
27129 5' -52.5 NC_005832.1 + 41309 0.71 0.744642
Target:  5'- -cGACAGGAGAGCGUC-CCugauGGCc--- -3'
miRNA:   3'- guUUGUCCUCUCGCAGaGG----CCGuuac -5'
27129 5' -52.5 NC_005832.1 + 71159 0.71 0.744642
Target:  5'- gGGGCuGGAGAGgcUCUCCGGCGGg- -3'
miRNA:   3'- gUUUGuCCUCUCgcAGAGGCCGUUac -5'
27129 5' -52.5 NC_005832.1 + 98617 0.71 0.734357
Target:  5'- cUAAACGGGAGGGCGUggUUGGCGc-- -3'
miRNA:   3'- -GUUUGUCCUCUCGCAgaGGCCGUuac -5'
27129 5' -52.5 NC_005832.1 + 96938 0.71 0.723973
Target:  5'- uCAAGCAGuGcGAGCGUCUCaaCGGCcuGGUGg -3'
miRNA:   3'- -GUUUGUC-CuCUCGCAGAG--GCCG--UUAC- -5'
27129 5' -52.5 NC_005832.1 + 29565 0.72 0.692338
Target:  5'- gGGGCAGGAGcAGgGUC-CCGGCGc-- -3'
miRNA:   3'- gUUUGUCCUC-UCgCAGaGGCCGUuac -5'
27129 5' -52.5 NC_005832.1 + 76133 0.73 0.649422
Target:  5'- cCGAGCAGGAGGGCG-CUgUUGGCGuUGg -3'
miRNA:   3'- -GUUUGUCCUCUCGCaGA-GGCCGUuAC- -5'
27129 5' -52.5 NC_005832.1 + 47633 0.76 0.441638
Target:  5'- uGGACuGGGAGGGCGUCg-UGGCAGUGg -3'
miRNA:   3'- gUUUG-UCCUCUCGCAGagGCCGUUAC- -5'
27129 5' -52.5 NC_005832.1 + 95727 1.09 0.003844
Target:  5'- cCAAACAGGAGAGCGUCUCCGGCAAUGa -3'
miRNA:   3'- -GUUUGUCCUCUCGCAGAGGCCGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.