miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 140131 0.66 0.889058
Target:  5'- cGCGCcGUGUcggcggagGCagcggACGCGCUCCGGaGCg -3'
miRNA:   3'- aCGCGuCAUA--------UGg----UGUGUGGGGCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 137737 0.66 0.889058
Target:  5'- gGCgGCGGgcgcCCGCGgGuCCCCGGGg -3'
miRNA:   3'- aCG-CGUCauauGGUGUgU-GGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 121876 0.66 0.889058
Target:  5'- cGCGCAGcggGaaGCuCugCUCGGGCa -3'
miRNA:   3'- aCGCGUCauaUggUGuGugGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 121044 0.66 0.889058
Target:  5'- cUGCGU-GUGUACC-CACACCUggugauccgcaGGGUa -3'
miRNA:   3'- -ACGCGuCAUAUGGuGUGUGGGg----------CCCG- -5'
2713 5' -56.8 NC_001491.2 + 75016 0.66 0.889058
Target:  5'- gGCGgAGUuUGCUGCaaACGCcaCCCGGGUu -3'
miRNA:   3'- aCGCgUCAuAUGGUG--UGUG--GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 58793 0.66 0.889058
Target:  5'- cGUGCAGgacUGCCGCaaACACCgCGGu- -3'
miRNA:   3'- aCGCGUCau-AUGGUG--UGUGGgGCCcg -5'
2713 5' -56.8 NC_001491.2 + 148583 0.66 0.882181
Target:  5'- cGCGCGGUGgcuCUGCgcgGCGCCcuccucaaaguCCGGGUc -3'
miRNA:   3'- aCGCGUCAUau-GGUG---UGUGG-----------GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 112955 0.66 0.880075
Target:  5'- gGCGCGGgcccgugacccuugACCAgAUAUggCCCGGGUa -3'
miRNA:   3'- aCGCGUCaua-----------UGGUgUGUG--GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 106096 0.66 0.875084
Target:  5'- cGCGUGGUGacguUCGCAauCCCCGcGGCg -3'
miRNA:   3'- aCGCGUCAUau--GGUGUguGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 67598 0.66 0.875084
Target:  5'- aGcCGCAGc--ACCGCGCugUuaacgugucuaCCGGGCg -3'
miRNA:   3'- aC-GCGUCauaUGGUGUGugG-----------GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 137673 0.66 0.874362
Target:  5'- gGCGCGGg--AgCGCGCgagcgccGCCUCGGGg -3'
miRNA:   3'- aCGCGUCauaUgGUGUG-------UGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 81519 0.66 0.870722
Target:  5'- uUGCGCuGggAUGCCcacggguuaacggugGCGCGgCUCGGGUa -3'
miRNA:   3'- -ACGCGuCa-UAUGG---------------UGUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 80816 0.66 0.867771
Target:  5'- cGCGCGGcucUGUACgGCgugcuGCGCCaCGGGUu -3'
miRNA:   3'- aCGCGUC---AUAUGgUG-----UGUGGgGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 124449 0.66 0.867771
Target:  5'- cGCGCAcGUGUcugcagaaaACCccgaagACAC-CCCCGuGGCc -3'
miRNA:   3'- aCGCGU-CAUA---------UGG------UGUGuGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 23282 0.66 0.867028
Target:  5'- gGCGC--UAUACCuucgcaaGCGCGCaaCGGGCg -3'
miRNA:   3'- aCGCGucAUAUGG-------UGUGUGggGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 106285 0.66 0.860248
Target:  5'- gGCGCAacucUGUGCCucauuacgaccCACACgCCgGGGCg -3'
miRNA:   3'- aCGCGUc---AUAUGGu----------GUGUG-GGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 137615 0.66 0.860248
Target:  5'- cGcCGCGGca-GCgGC-CGCCCCGGGg -3'
miRNA:   3'- aC-GCGUCauaUGgUGuGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 135299 0.66 0.860248
Target:  5'- cGCuGCAGUuu-CCAUACA-CCCGGuGUa -3'
miRNA:   3'- aCG-CGUCAuauGGUGUGUgGGGCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 148964 0.66 0.855635
Target:  5'- aGCGCGGcggagggccuggGCCACGCcggGgCUCGGGCc -3'
miRNA:   3'- aCGCGUCaua---------UGGUGUG---UgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 81240 0.66 0.85252
Target:  5'- gGCGauuccCGGUGUugACCACGCGCCgCaGGUa -3'
miRNA:   3'- aCGC-----GUCAUA--UGGUGUGUGGgGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.