miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 131279 0.98 0.012227
Target:  5'- cUGCGCAGUAUACCACA-ACCCCGGGCu -3'
miRNA:   3'- -ACGCGUCAUAUGGUGUgUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 115726 0.78 0.276427
Target:  5'- aGCGCAGggugGCCACcccgggccaccagGCuCCCCGGGCc -3'
miRNA:   3'- aCGCGUCaua-UGGUG-------------UGuGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 121659 0.76 0.340606
Target:  5'- gGCGCAGaacgccCCugGC-CCCCGGGCc -3'
miRNA:   3'- aCGCGUCauau--GGugUGuGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 65495 0.73 0.490689
Target:  5'- --aGCAGUGUuggcGCCACAgGugccagccggggaagCCCCGGGCa -3'
miRNA:   3'- acgCGUCAUA----UGGUGUgU---------------GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 52003 0.73 0.496422
Target:  5'- aUGCGCGGU--ACCGCccaaaACCCCGuGGUa -3'
miRNA:   3'- -ACGCGUCAuaUGGUGug---UGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 137380 0.72 0.535362
Target:  5'- cUGCGaCAGUAagcGCCACGCGCCgCCgccugugccugcGGGCc -3'
miRNA:   3'- -ACGC-GUCAUa--UGGUGUGUGG-GG------------CCCG- -5'
2713 5' -56.8 NC_001491.2 + 8608 0.72 0.555235
Target:  5'- cGCGCAcgaccagcggcGUAUGCCGUACAgCCCuGGCg -3'
miRNA:   3'- aCGCGU-----------CAUAUGGUGUGUgGGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 146484 0.72 0.555235
Target:  5'- uUGCGuCGGggcccgaggGCCGCGCAgaCCCGGGUg -3'
miRNA:   3'- -ACGC-GUCaua------UGGUGUGUg-GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 1914 0.71 0.585424
Target:  5'- aGCGCgacgAGUAgacGCCGCGCGggUCCUGGGUg -3'
miRNA:   3'- aCGCG----UCAUa--UGGUGUGU--GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 117107 0.71 0.595563
Target:  5'- gGCGCAGUucUGCCAgaaguucaucCACGCUCCGcGCg -3'
miRNA:   3'- aCGCGUCAu-AUGGU----------GUGUGGGGCcCG- -5'
2713 5' -56.8 NC_001491.2 + 114946 0.71 0.605728
Target:  5'- cUGCGCcGUG---CGCugGCCCCGGGa -3'
miRNA:   3'- -ACGCGuCAUaugGUGugUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 142800 0.71 0.605728
Target:  5'- aGCGCccccauCCAUACACUCCGGGa -3'
miRNA:   3'- aCGCGucauauGGUGUGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 47148 0.71 0.615913
Target:  5'- cGCGCAGa--ACgACGCAUcuaCCUGGGCg -3'
miRNA:   3'- aCGCGUCauaUGgUGUGUG---GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 61485 0.71 0.62611
Target:  5'- aGCGCuGUGcGCCGCugGagUCCGGGUa -3'
miRNA:   3'- aCGCGuCAUaUGGUGugUg-GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 55697 0.7 0.655679
Target:  5'- cGCGgaucaCAGgcaGUACCGCgagguccgaaucgACGCUCCGGGCg -3'
miRNA:   3'- aCGC-----GUCa--UAUGGUG-------------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 16282 0.7 0.656697
Target:  5'- cGCGCgauAGcUGUACCAgGCGCCgagaGGGCg -3'
miRNA:   3'- aCGCG---UC-AUAUGGUgUGUGGgg--CCCG- -5'
2713 5' -56.8 NC_001491.2 + 118979 0.7 0.663817
Target:  5'- aGCGCGGUGgggauacuuaccUcgaagccggcgaagGCUAUACcuuCCCCGGGCa -3'
miRNA:   3'- aCGCGUCAU------------A--------------UGGUGUGu--GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 139706 0.7 0.666865
Target:  5'- cGcCGCGGcGUACCuGCGCGCCCgCGGccGCa -3'
miRNA:   3'- aC-GCGUCaUAUGG-UGUGUGGG-GCC--CG- -5'
2713 5' -56.8 NC_001491.2 + 28059 0.7 0.666865
Target:  5'- gGCGCAGc--ACCGCAUACUCUGGa- -3'
miRNA:   3'- aCGCGUCauaUGGUGUGUGGGGCCcg -5'
2713 5' -56.8 NC_001491.2 + 121442 0.7 0.677005
Target:  5'- aUGCgGCAGgauccgUCGCACGCCCCGcacGGCu -3'
miRNA:   3'- -ACG-CGUCauau--GGUGUGUGGGGC---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.