Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2713 | 5' | -56.8 | NC_001491.2 | + | 114909 | 0.7 | 0.677005 |
Target: 5'- cGCGCGGUccucACCuccaGCACCCucuuCGGGCc -3' miRNA: 3'- aCGCGUCAua--UGGug--UGUGGG----GCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 145017 | 0.69 | 0.697165 |
Target: 5'- gGCGaccgGGUcgGCCGCGucccCACCgCCGGGUg -3' miRNA: 3'- aCGCg---UCAuaUGGUGU----GUGG-GGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 117433 | 0.69 | 0.697165 |
Target: 5'- gGCgGCGGcu--UCGUGCGCCCCGGGCg -3' miRNA: 3'- aCG-CGUCauauGGUGUGUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 34492 | 0.69 | 0.707169 |
Target: 5'- gGCGUgcUcgGCCACGCGCgCCCuGGCc -3' miRNA: 3'- aCGCGucAuaUGGUGUGUG-GGGcCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 74887 | 0.69 | 0.717109 |
Target: 5'- gGCGCAGguaGCCuguCGCAUCuuGGGg -3' miRNA: 3'- aCGCGUCauaUGGu--GUGUGGggCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 12479 | 0.69 | 0.717109 |
Target: 5'- gGCGCGGUAUGCCugGCAggcaacagccacUCCCacuGCa -3' miRNA: 3'- aCGCGUCAUAUGGugUGU------------GGGGcc-CG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 118113 | 0.69 | 0.726978 |
Target: 5'- gGCGgAGgGUcCCcgGCACCCCGGGUc -3' miRNA: 3'- aCGCgUCaUAuGGugUGUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 83600 | 0.69 | 0.726978 |
Target: 5'- cGUGCcgacgugGUGCC-CAUGCCCgGGGCg -3' miRNA: 3'- aCGCGuca----UAUGGuGUGUGGGgCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 55072 | 0.69 | 0.746461 |
Target: 5'- cGaCGCGGUGUACacguGgGCACCuuGGaGCg -3' miRNA: 3'- aC-GCGUCAUAUGg---UgUGUGGggCC-CG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 93354 | 0.68 | 0.756059 |
Target: 5'- cGCGCAGaa-ACC-CACACCCuugaaCGuGGCa -3' miRNA: 3'- aCGCGUCauaUGGuGUGUGGG-----GC-CCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 31039 | 0.68 | 0.773053 |
Target: 5'- cGCGUuugAGUccucggaGUACCGCgagcuguGCGCCCUGGGg -3' miRNA: 3'- aCGCG---UCA-------UAUGGUG-------UGUGGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 147364 | 0.68 | 0.774917 |
Target: 5'- aGCGCcgcuUGCCGCucuUGCCCCugGGGCg -3' miRNA: 3'- aCGCGucauAUGGUGu--GUGGGG--CCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 20227 | 0.68 | 0.774917 |
Target: 5'- cUGgGCcuaaaUGUACCAUACACaaccuCCGGGCu -3' miRNA: 3'- -ACgCGuc---AUAUGGUGUGUGg----GGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 107745 | 0.68 | 0.774917 |
Target: 5'- cGUGUAGUuaucguggGCCAggauccguacCACGCgCCGGGCc -3' miRNA: 3'- aCGCGUCAua------UGGU----------GUGUGgGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 68720 | 0.68 | 0.793269 |
Target: 5'- aGCGCcGac-GCCGcCACGCCCCaGGUa -3' miRNA: 3'- aCGCGuCauaUGGU-GUGUGGGGcCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 2845 | 0.67 | 0.805776 |
Target: 5'- aGCGCGccccGUACCcagugggcaauaaGCGCCUCGGGCg -3' miRNA: 3'- aCGCGUca--UAUGGug-----------UGUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 114631 | 0.67 | 0.814523 |
Target: 5'- cGCGCAGagccACCGCGCggccaaccgauggggACUCgGGGCc -3' miRNA: 3'- aCGCGUCaua-UGGUGUG---------------UGGGgCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 66921 | 0.67 | 0.819692 |
Target: 5'- gGUGCGGUuuuaGCCACG-GCUgCGGGCc -3' miRNA: 3'- aCGCGUCAua--UGGUGUgUGGgGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 69598 | 0.67 | 0.819692 |
Target: 5'- cGUGCAG-GUugCugGCGagaacgcuacCCCCGGGa -3' miRNA: 3'- aCGCGUCaUAugGugUGU----------GGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 147459 | 0.67 | 0.825647 |
Target: 5'- aGgGCuGUcgACCGgccccgagggaucgUAC-CCCCGGGCg -3' miRNA: 3'- aCgCGuCAuaUGGU--------------GUGuGGGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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