miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 81240 0.66 0.85252
Target:  5'- gGCGauuccCGGUGUugACCACGCGCCgCaGGUa -3'
miRNA:   3'- aCGC-----GUCAUA--UGGUGUGUGGgGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 31794 0.66 0.85252
Target:  5'- cGUGUAuGUAUGCCGCcuauauuCGCCUgGGGg -3'
miRNA:   3'- aCGCGU-CAUAUGGUGu------GUGGGgCCCg -5'
2713 5' -56.8 NC_001491.2 + 146936 0.67 0.844593
Target:  5'- gGCugGGUAUGCUgaACACGgCCUGGGUg -3'
miRNA:   3'- aCGcgUCAUAUGG--UGUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 34877 0.67 0.836475
Target:  5'- gGCGCGGU--GCCAUgcuGCGCUUCaGGGUc -3'
miRNA:   3'- aCGCGUCAuaUGGUG---UGUGGGG-CCCG- -5'
2713 5' -56.8 NC_001491.2 + 116348 0.67 0.836475
Target:  5'- gGCGCcgcuGGUGcGCUACaACGCcgagggggCCCGGGCc -3'
miRNA:   3'- aCGCG----UCAUaUGGUG-UGUG--------GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 13942 0.67 0.828172
Target:  5'- aGcCGCuGGUAUAgCGCGCcggggcuggcgGCCuuGGGCg -3'
miRNA:   3'- aC-GCG-UCAUAUgGUGUG-----------UGGggCCCG- -5'
2713 5' -56.8 NC_001491.2 + 125644 0.67 0.828172
Target:  5'- -aCGCGGUGgucgaccCCGCGCGCCUuCGGGa -3'
miRNA:   3'- acGCGUCAUau-----GGUGUGUGGG-GCCCg -5'
2713 5' -56.8 NC_001491.2 + 73253 0.67 0.827332
Target:  5'- uUGgGCAGUuuaGUGCUACACgaggccaACUCUGGGg -3'
miRNA:   3'- -ACgCGUCA---UAUGGUGUG-------UGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 147459 0.67 0.825647
Target:  5'- aGgGCuGUcgACCGgccccgagggaucgUAC-CCCCGGGCg -3'
miRNA:   3'- aCgCGuCAuaUGGU--------------GUGuGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 66921 0.67 0.819692
Target:  5'- gGUGCGGUuuuaGCCACG-GCUgCGGGCc -3'
miRNA:   3'- aCGCGUCAua--UGGUGUgUGGgGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 69598 0.67 0.819692
Target:  5'- cGUGCAG-GUugCugGCGagaacgcuacCCCCGGGa -3'
miRNA:   3'- aCGCGUCaUAugGugUGU----------GGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 114631 0.67 0.814523
Target:  5'- cGCGCAGagccACCGCGCggccaaccgauggggACUCgGGGCc -3'
miRNA:   3'- aCGCGUCaua-UGGUGUG---------------UGGGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 2845 0.67 0.805776
Target:  5'- aGCGCGccccGUACCcagugggcaauaaGCGCCUCGGGCg -3'
miRNA:   3'- aCGCGUca--UAUGGug-----------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 68720 0.68 0.793269
Target:  5'- aGCGCcGac-GCCGcCACGCCCCaGGUa -3'
miRNA:   3'- aCGCGuCauaUGGU-GUGUGGGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 20227 0.68 0.774917
Target:  5'- cUGgGCcuaaaUGUACCAUACACaaccuCCGGGCu -3'
miRNA:   3'- -ACgCGuc---AUAUGGUGUGUGg----GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 107745 0.68 0.774917
Target:  5'- cGUGUAGUuaucguggGCCAggauccguacCACGCgCCGGGCc -3'
miRNA:   3'- aCGCGUCAua------UGGU----------GUGUGgGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 147364 0.68 0.774917
Target:  5'- aGCGCcgcuUGCCGCucuUGCCCCugGGGCg -3'
miRNA:   3'- aCGCGucauAUGGUGu--GUGGGG--CCCG- -5'
2713 5' -56.8 NC_001491.2 + 31039 0.68 0.773053
Target:  5'- cGCGUuugAGUccucggaGUACCGCgagcuguGCGCCCUGGGg -3'
miRNA:   3'- aCGCG---UCA-------UAUGGUG-------UGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 93354 0.68 0.756059
Target:  5'- cGCGCAGaa-ACC-CACACCCuugaaCGuGGCa -3'
miRNA:   3'- aCGCGUCauaUGGuGUGUGGG-----GC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 55072 0.69 0.746461
Target:  5'- cGaCGCGGUGUACacguGgGCACCuuGGaGCg -3'
miRNA:   3'- aC-GCGUCAUAUGg---UgUGUGGggCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.