miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 83600 0.69 0.726978
Target:  5'- cGUGCcgacgugGUGCC-CAUGCCCgGGGCg -3'
miRNA:   3'- aCGCGuca----UAUGGuGUGUGGGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 118113 0.69 0.726978
Target:  5'- gGCGgAGgGUcCCcgGCACCCCGGGUc -3'
miRNA:   3'- aCGCgUCaUAuGGugUGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 12479 0.69 0.717109
Target:  5'- gGCGCGGUAUGCCugGCAggcaacagccacUCCCacuGCa -3'
miRNA:   3'- aCGCGUCAUAUGGugUGU------------GGGGcc-CG- -5'
2713 5' -56.8 NC_001491.2 + 74887 0.69 0.717109
Target:  5'- gGCGCAGguaGCCuguCGCAUCuuGGGg -3'
miRNA:   3'- aCGCGUCauaUGGu--GUGUGGggCCCg -5'
2713 5' -56.8 NC_001491.2 + 34492 0.69 0.707169
Target:  5'- gGCGUgcUcgGCCACGCGCgCCCuGGCc -3'
miRNA:   3'- aCGCGucAuaUGGUGUGUG-GGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 145017 0.69 0.697165
Target:  5'- gGCGaccgGGUcgGCCGCGucccCACCgCCGGGUg -3'
miRNA:   3'- aCGCg---UCAuaUGGUGU----GUGG-GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 117433 0.69 0.697165
Target:  5'- gGCgGCGGcu--UCGUGCGCCCCGGGCg -3'
miRNA:   3'- aCG-CGUCauauGGUGUGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 114909 0.7 0.677005
Target:  5'- cGCGCGGUccucACCuccaGCACCCucuuCGGGCc -3'
miRNA:   3'- aCGCGUCAua--UGGug--UGUGGG----GCCCG- -5'
2713 5' -56.8 NC_001491.2 + 121442 0.7 0.677005
Target:  5'- aUGCgGCAGgauccgUCGCACGCCCCGcacGGCu -3'
miRNA:   3'- -ACG-CGUCauau--GGUGUGUGGGGC---CCG- -5'
2713 5' -56.8 NC_001491.2 + 139706 0.7 0.666865
Target:  5'- cGcCGCGGcGUACCuGCGCGCCCgCGGccGCa -3'
miRNA:   3'- aC-GCGUCaUAUGG-UGUGUGGG-GCC--CG- -5'
2713 5' -56.8 NC_001491.2 + 28059 0.7 0.666865
Target:  5'- gGCGCAGc--ACCGCAUACUCUGGa- -3'
miRNA:   3'- aCGCGUCauaUGGUGUGUGGGGCCcg -5'
2713 5' -56.8 NC_001491.2 + 118979 0.7 0.663817
Target:  5'- aGCGCGGUGgggauacuuaccUcgaagccggcgaagGCUAUACcuuCCCCGGGCa -3'
miRNA:   3'- aCGCGUCAU------------A--------------UGGUGUGu--GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 16282 0.7 0.656697
Target:  5'- cGCGCgauAGcUGUACCAgGCGCCgagaGGGCg -3'
miRNA:   3'- aCGCG---UC-AUAUGGUgUGUGGgg--CCCG- -5'
2713 5' -56.8 NC_001491.2 + 55697 0.7 0.655679
Target:  5'- cGCGgaucaCAGgcaGUACCGCgagguccgaaucgACGCUCCGGGCg -3'
miRNA:   3'- aCGC-----GUCa--UAUGGUG-------------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 61485 0.71 0.62611
Target:  5'- aGCGCuGUGcGCCGCugGagUCCGGGUa -3'
miRNA:   3'- aCGCGuCAUaUGGUGugUg-GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 47148 0.71 0.615913
Target:  5'- cGCGCAGa--ACgACGCAUcuaCCUGGGCg -3'
miRNA:   3'- aCGCGUCauaUGgUGUGUG---GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 114946 0.71 0.605728
Target:  5'- cUGCGCcGUG---CGCugGCCCCGGGa -3'
miRNA:   3'- -ACGCGuCAUaugGUGugUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 142800 0.71 0.605728
Target:  5'- aGCGCccccauCCAUACACUCCGGGa -3'
miRNA:   3'- aCGCGucauauGGUGUGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 117107 0.71 0.595563
Target:  5'- gGCGCAGUucUGCCAgaaguucaucCACGCUCCGcGCg -3'
miRNA:   3'- aCGCGUCAu-AUGGU----------GUGUGGGGCcCG- -5'
2713 5' -56.8 NC_001491.2 + 1914 0.71 0.585424
Target:  5'- aGCGCgacgAGUAgacGCCGCGCGggUCCUGGGUg -3'
miRNA:   3'- aCGCG----UCAUa--UGGUGUGU--GGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.