miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 1914 0.71 0.585424
Target:  5'- aGCGCgacgAGUAgacGCCGCGCGggUCCUGGGUg -3'
miRNA:   3'- aCGCG----UCAUa--UGGUGUGU--GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 2845 0.67 0.805776
Target:  5'- aGCGCGccccGUACCcagugggcaauaaGCGCCUCGGGCg -3'
miRNA:   3'- aCGCGUca--UAUGGug-----------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 8608 0.72 0.555235
Target:  5'- cGCGCAcgaccagcggcGUAUGCCGUACAgCCCuGGCg -3'
miRNA:   3'- aCGCGU-----------CAUAUGGUGUGUgGGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 12479 0.69 0.717109
Target:  5'- gGCGCGGUAUGCCugGCAggcaacagccacUCCCacuGCa -3'
miRNA:   3'- aCGCGUCAUAUGGugUGU------------GGGGcc-CG- -5'
2713 5' -56.8 NC_001491.2 + 13942 0.67 0.828172
Target:  5'- aGcCGCuGGUAUAgCGCGCcggggcuggcgGCCuuGGGCg -3'
miRNA:   3'- aC-GCG-UCAUAUgGUGUG-----------UGGggCCCG- -5'
2713 5' -56.8 NC_001491.2 + 16282 0.7 0.656697
Target:  5'- cGCGCgauAGcUGUACCAgGCGCCgagaGGGCg -3'
miRNA:   3'- aCGCG---UC-AUAUGGUgUGUGGgg--CCCG- -5'
2713 5' -56.8 NC_001491.2 + 20227 0.68 0.774917
Target:  5'- cUGgGCcuaaaUGUACCAUACACaaccuCCGGGCu -3'
miRNA:   3'- -ACgCGuc---AUAUGGUGUGUGg----GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 23282 0.66 0.867028
Target:  5'- gGCGC--UAUACCuucgcaaGCGCGCaaCGGGCg -3'
miRNA:   3'- aCGCGucAUAUGG-------UGUGUGggGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 28059 0.7 0.666865
Target:  5'- gGCGCAGc--ACCGCAUACUCUGGa- -3'
miRNA:   3'- aCGCGUCauaUGGUGUGUGGGGCCcg -5'
2713 5' -56.8 NC_001491.2 + 31039 0.68 0.773053
Target:  5'- cGCGUuugAGUccucggaGUACCGCgagcuguGCGCCCUGGGg -3'
miRNA:   3'- aCGCG---UCA-------UAUGGUG-------UGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 31794 0.66 0.85252
Target:  5'- cGUGUAuGUAUGCCGCcuauauuCGCCUgGGGg -3'
miRNA:   3'- aCGCGU-CAUAUGGUGu------GUGGGgCCCg -5'
2713 5' -56.8 NC_001491.2 + 34492 0.69 0.707169
Target:  5'- gGCGUgcUcgGCCACGCGCgCCCuGGCc -3'
miRNA:   3'- aCGCGucAuaUGGUGUGUG-GGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 34877 0.67 0.836475
Target:  5'- gGCGCGGU--GCCAUgcuGCGCUUCaGGGUc -3'
miRNA:   3'- aCGCGUCAuaUGGUG---UGUGGGG-CCCG- -5'
2713 5' -56.8 NC_001491.2 + 42551 0.66 0.85252
Target:  5'- cUGcCGC-GUAUAUCucggcCGCAgCCUGGGCg -3'
miRNA:   3'- -AC-GCGuCAUAUGGu----GUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 47148 0.71 0.615913
Target:  5'- cGCGCAGa--ACgACGCAUcuaCCUGGGCg -3'
miRNA:   3'- aCGCGUCauaUGgUGUGUG---GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 52003 0.73 0.496422
Target:  5'- aUGCGCGGU--ACCGCccaaaACCCCGuGGUa -3'
miRNA:   3'- -ACGCGUCAuaUGGUGug---UGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 55072 0.69 0.746461
Target:  5'- cGaCGCGGUGUACacguGgGCACCuuGGaGCg -3'
miRNA:   3'- aC-GCGUCAUAUGg---UgUGUGGggCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 55697 0.7 0.655679
Target:  5'- cGCGgaucaCAGgcaGUACCGCgagguccgaaucgACGCUCCGGGCg -3'
miRNA:   3'- aCGC-----GUCa--UAUGGUG-------------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 58793 0.66 0.889058
Target:  5'- cGUGCAGgacUGCCGCaaACACCgCGGu- -3'
miRNA:   3'- aCGCGUCau-AUGGUG--UGUGGgGCCcg -5'
2713 5' -56.8 NC_001491.2 + 61485 0.71 0.62611
Target:  5'- aGCGCuGUGcGCCGCugGagUCCGGGUa -3'
miRNA:   3'- aCGCGuCAUaUGGUGugUg-GGGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.