Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2713 | 5' | -56.8 | NC_001491.2 | + | 115726 | 0.78 | 0.276427 |
Target: 5'- aGCGCAGggugGCCACcccgggccaccagGCuCCCCGGGCc -3' miRNA: 3'- aCGCGUCaua-UGGUG-------------UGuGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 116348 | 0.67 | 0.836475 |
Target: 5'- gGCGCcgcuGGUGcGCUACaACGCcgagggggCCCGGGCc -3' miRNA: 3'- aCGCG----UCAUaUGGUG-UGUG--------GGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 117107 | 0.71 | 0.595563 |
Target: 5'- gGCGCAGUucUGCCAgaaguucaucCACGCUCCGcGCg -3' miRNA: 3'- aCGCGUCAu-AUGGU----------GUGUGGGGCcCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 117433 | 0.69 | 0.697165 |
Target: 5'- gGCgGCGGcu--UCGUGCGCCCCGGGCg -3' miRNA: 3'- aCG-CGUCauauGGUGUGUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 118113 | 0.69 | 0.726978 |
Target: 5'- gGCGgAGgGUcCCcgGCACCCCGGGUc -3' miRNA: 3'- aCGCgUCaUAuGGugUGUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 118979 | 0.7 | 0.663817 |
Target: 5'- aGCGCGGUGgggauacuuaccUcgaagccggcgaagGCUAUACcuuCCCCGGGCa -3' miRNA: 3'- aCGCGUCAU------------A--------------UGGUGUGu--GGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 121044 | 0.66 | 0.889058 |
Target: 5'- cUGCGU-GUGUACC-CACACCUggugauccgcaGGGUa -3' miRNA: 3'- -ACGCGuCAUAUGGuGUGUGGGg----------CCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 121442 | 0.7 | 0.677005 |
Target: 5'- aUGCgGCAGgauccgUCGCACGCCCCGcacGGCu -3' miRNA: 3'- -ACG-CGUCauau--GGUGUGUGGGGC---CCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 121659 | 0.76 | 0.340606 |
Target: 5'- gGCGCAGaacgccCCugGC-CCCCGGGCc -3' miRNA: 3'- aCGCGUCauau--GGugUGuGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 121876 | 0.66 | 0.889058 |
Target: 5'- cGCGCAGcggGaaGCuCugCUCGGGCa -3' miRNA: 3'- aCGCGUCauaUggUGuGugGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 124449 | 0.66 | 0.867771 |
Target: 5'- cGCGCAcGUGUcugcagaaaACCccgaagACAC-CCCCGuGGCc -3' miRNA: 3'- aCGCGU-CAUA---------UGG------UGUGuGGGGC-CCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 125644 | 0.67 | 0.828172 |
Target: 5'- -aCGCGGUGgucgaccCCGCGCGCCUuCGGGa -3' miRNA: 3'- acGCGUCAUau-----GGUGUGUGGG-GCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 131279 | 0.98 | 0.012227 |
Target: 5'- cUGCGCAGUAUACCACA-ACCCCGGGCu -3' miRNA: 3'- -ACGCGUCAUAUGGUGUgUGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 135299 | 0.66 | 0.860248 |
Target: 5'- cGCuGCAGUuu-CCAUACA-CCCGGuGUa -3' miRNA: 3'- aCG-CGUCAuauGGUGUGUgGGGCC-CG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 137380 | 0.72 | 0.535362 |
Target: 5'- cUGCGaCAGUAagcGCCACGCGCCgCCgccugugccugcGGGCc -3' miRNA: 3'- -ACGC-GUCAUa--UGGUGUGUGG-GG------------CCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 137615 | 0.66 | 0.860248 |
Target: 5'- cGcCGCGGca-GCgGC-CGCCCCGGGg -3' miRNA: 3'- aC-GCGUCauaUGgUGuGUGGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 137673 | 0.66 | 0.874362 |
Target: 5'- gGCGCGGg--AgCGCGCgagcgccGCCUCGGGg -3' miRNA: 3'- aCGCGUCauaUgGUGUG-------UGGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 137737 | 0.66 | 0.889058 |
Target: 5'- gGCgGCGGgcgcCCGCGgGuCCCCGGGg -3' miRNA: 3'- aCG-CGUCauauGGUGUgU-GGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 139706 | 0.7 | 0.666865 |
Target: 5'- cGcCGCGGcGUACCuGCGCGCCCgCGGccGCa -3' miRNA: 3'- aC-GCGUCaUAUGG-UGUGUGGG-GCC--CG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 140131 | 0.66 | 0.889058 |
Target: 5'- cGCGCcGUGUcggcggagGCagcggACGCGCUCCGGaGCg -3' miRNA: 3'- aCGCGuCAUA--------UGg----UGUGUGGGGCC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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