Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2713 | 5' | -56.8 | NC_001491.2 | + | 142800 | 0.71 | 0.605728 |
Target: 5'- aGCGCccccauCCAUACACUCCGGGa -3' miRNA: 3'- aCGCGucauauGGUGUGUGGGGCCCg -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 145017 | 0.69 | 0.697165 |
Target: 5'- gGCGaccgGGUcgGCCGCGucccCACCgCCGGGUg -3' miRNA: 3'- aCGCg---UCAuaUGGUGU----GUGG-GGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 146484 | 0.72 | 0.555235 |
Target: 5'- uUGCGuCGGggcccgaggGCCGCGCAgaCCCGGGUg -3' miRNA: 3'- -ACGC-GUCaua------UGGUGUGUg-GGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 146936 | 0.67 | 0.844593 |
Target: 5'- gGCugGGUAUGCUgaACACGgCCUGGGUg -3' miRNA: 3'- aCGcgUCAUAUGG--UGUGUgGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 147364 | 0.68 | 0.774917 |
Target: 5'- aGCGCcgcuUGCCGCucuUGCCCCugGGGCg -3' miRNA: 3'- aCGCGucauAUGGUGu--GUGGGG--CCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 147459 | 0.67 | 0.825647 |
Target: 5'- aGgGCuGUcgACCGgccccgagggaucgUAC-CCCCGGGCg -3' miRNA: 3'- aCgCGuCAuaUGGU--------------GUGuGGGGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 148583 | 0.66 | 0.882181 |
Target: 5'- cGCGCGGUGgcuCUGCgcgGCGCCcuccucaaaguCCGGGUc -3' miRNA: 3'- aCGCGUCAUau-GGUG---UGUGG-----------GGCCCG- -5' |
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2713 | 5' | -56.8 | NC_001491.2 | + | 148964 | 0.66 | 0.855635 |
Target: 5'- aGCGCGGcggagggccuggGCCACGCcggGgCUCGGGCc -3' miRNA: 3'- aCGCGUCaua---------UGGUGUG---UgGGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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