miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 148964 0.66 0.855635
Target:  5'- aGCGCGGcggagggccuggGCCACGCcggGgCUCGGGCc -3'
miRNA:   3'- aCGCGUCaua---------UGGUGUG---UgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 148583 0.66 0.882181
Target:  5'- cGCGCGGUGgcuCUGCgcgGCGCCcuccucaaaguCCGGGUc -3'
miRNA:   3'- aCGCGUCAUau-GGUG---UGUGG-----------GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 147459 0.67 0.825647
Target:  5'- aGgGCuGUcgACCGgccccgagggaucgUAC-CCCCGGGCg -3'
miRNA:   3'- aCgCGuCAuaUGGU--------------GUGuGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 147364 0.68 0.774917
Target:  5'- aGCGCcgcuUGCCGCucuUGCCCCugGGGCg -3'
miRNA:   3'- aCGCGucauAUGGUGu--GUGGGG--CCCG- -5'
2713 5' -56.8 NC_001491.2 + 146936 0.67 0.844593
Target:  5'- gGCugGGUAUGCUgaACACGgCCUGGGUg -3'
miRNA:   3'- aCGcgUCAUAUGG--UGUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 146484 0.72 0.555235
Target:  5'- uUGCGuCGGggcccgaggGCCGCGCAgaCCCGGGUg -3'
miRNA:   3'- -ACGC-GUCaua------UGGUGUGUg-GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 145017 0.69 0.697165
Target:  5'- gGCGaccgGGUcgGCCGCGucccCACCgCCGGGUg -3'
miRNA:   3'- aCGCg---UCAuaUGGUGU----GUGG-GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 142800 0.71 0.605728
Target:  5'- aGCGCccccauCCAUACACUCCGGGa -3'
miRNA:   3'- aCGCGucauauGGUGUGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 140131 0.66 0.889058
Target:  5'- cGCGCcGUGUcggcggagGCagcggACGCGCUCCGGaGCg -3'
miRNA:   3'- aCGCGuCAUA--------UGg----UGUGUGGGGCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 139706 0.7 0.666865
Target:  5'- cGcCGCGGcGUACCuGCGCGCCCgCGGccGCa -3'
miRNA:   3'- aC-GCGUCaUAUGG-UGUGUGGG-GCC--CG- -5'
2713 5' -56.8 NC_001491.2 + 137737 0.66 0.889058
Target:  5'- gGCgGCGGgcgcCCGCGgGuCCCCGGGg -3'
miRNA:   3'- aCG-CGUCauauGGUGUgU-GGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 137673 0.66 0.874362
Target:  5'- gGCGCGGg--AgCGCGCgagcgccGCCUCGGGg -3'
miRNA:   3'- aCGCGUCauaUgGUGUG-------UGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 137615 0.66 0.860248
Target:  5'- cGcCGCGGca-GCgGC-CGCCCCGGGg -3'
miRNA:   3'- aC-GCGUCauaUGgUGuGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 137380 0.72 0.535362
Target:  5'- cUGCGaCAGUAagcGCCACGCGCCgCCgccugugccugcGGGCc -3'
miRNA:   3'- -ACGC-GUCAUa--UGGUGUGUGG-GG------------CCCG- -5'
2713 5' -56.8 NC_001491.2 + 135299 0.66 0.860248
Target:  5'- cGCuGCAGUuu-CCAUACA-CCCGGuGUa -3'
miRNA:   3'- aCG-CGUCAuauGGUGUGUgGGGCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 131279 0.98 0.012227
Target:  5'- cUGCGCAGUAUACCACA-ACCCCGGGCu -3'
miRNA:   3'- -ACGCGUCAUAUGGUGUgUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 125644 0.67 0.828172
Target:  5'- -aCGCGGUGgucgaccCCGCGCGCCUuCGGGa -3'
miRNA:   3'- acGCGUCAUau-----GGUGUGUGGG-GCCCg -5'
2713 5' -56.8 NC_001491.2 + 124449 0.66 0.867771
Target:  5'- cGCGCAcGUGUcugcagaaaACCccgaagACAC-CCCCGuGGCc -3'
miRNA:   3'- aCGCGU-CAUA---------UGG------UGUGuGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 121876 0.66 0.889058
Target:  5'- cGCGCAGcggGaaGCuCugCUCGGGCa -3'
miRNA:   3'- aCGCGUCauaUggUGuGugGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 121659 0.76 0.340606
Target:  5'- gGCGCAGaacgccCCugGC-CCCCGGGCc -3'
miRNA:   3'- aCGCGUCauau--GGugUGuGGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.