miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 121442 0.7 0.677005
Target:  5'- aUGCgGCAGgauccgUCGCACGCCCCGcacGGCu -3'
miRNA:   3'- -ACG-CGUCauau--GGUGUGUGGGGC---CCG- -5'
2713 5' -56.8 NC_001491.2 + 121044 0.66 0.889058
Target:  5'- cUGCGU-GUGUACC-CACACCUggugauccgcaGGGUa -3'
miRNA:   3'- -ACGCGuCAUAUGGuGUGUGGGg----------CCCG- -5'
2713 5' -56.8 NC_001491.2 + 118979 0.7 0.663817
Target:  5'- aGCGCGGUGgggauacuuaccUcgaagccggcgaagGCUAUACcuuCCCCGGGCa -3'
miRNA:   3'- aCGCGUCAU------------A--------------UGGUGUGu--GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 118113 0.69 0.726978
Target:  5'- gGCGgAGgGUcCCcgGCACCCCGGGUc -3'
miRNA:   3'- aCGCgUCaUAuGGugUGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 117433 0.69 0.697165
Target:  5'- gGCgGCGGcu--UCGUGCGCCCCGGGCg -3'
miRNA:   3'- aCG-CGUCauauGGUGUGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 117107 0.71 0.595563
Target:  5'- gGCGCAGUucUGCCAgaaguucaucCACGCUCCGcGCg -3'
miRNA:   3'- aCGCGUCAu-AUGGU----------GUGUGGGGCcCG- -5'
2713 5' -56.8 NC_001491.2 + 116348 0.67 0.836475
Target:  5'- gGCGCcgcuGGUGcGCUACaACGCcgagggggCCCGGGCc -3'
miRNA:   3'- aCGCG----UCAUaUGGUG-UGUG--------GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 115726 0.78 0.276427
Target:  5'- aGCGCAGggugGCCACcccgggccaccagGCuCCCCGGGCc -3'
miRNA:   3'- aCGCGUCaua-UGGUG-------------UGuGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 114946 0.71 0.605728
Target:  5'- cUGCGCcGUG---CGCugGCCCCGGGa -3'
miRNA:   3'- -ACGCGuCAUaugGUGugUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 114909 0.7 0.677005
Target:  5'- cGCGCGGUccucACCuccaGCACCCucuuCGGGCc -3'
miRNA:   3'- aCGCGUCAua--UGGug--UGUGGG----GCCCG- -5'
2713 5' -56.8 NC_001491.2 + 114631 0.67 0.814523
Target:  5'- cGCGCAGagccACCGCGCggccaaccgauggggACUCgGGGCc -3'
miRNA:   3'- aCGCGUCaua-UGGUGUG---------------UGGGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 112955 0.66 0.880075
Target:  5'- gGCGCGGgcccgugacccuugACCAgAUAUggCCCGGGUa -3'
miRNA:   3'- aCGCGUCaua-----------UGGUgUGUG--GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 107745 0.68 0.774917
Target:  5'- cGUGUAGUuaucguggGCCAggauccguacCACGCgCCGGGCc -3'
miRNA:   3'- aCGCGUCAua------UGGU----------GUGUGgGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 106285 0.66 0.860248
Target:  5'- gGCGCAacucUGUGCCucauuacgaccCACACgCCgGGGCg -3'
miRNA:   3'- aCGCGUc---AUAUGGu----------GUGUG-GGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 106096 0.66 0.875084
Target:  5'- cGCGUGGUGacguUCGCAauCCCCGcGGCg -3'
miRNA:   3'- aCGCGUCAUau--GGUGUguGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 93354 0.68 0.756059
Target:  5'- cGCGCAGaa-ACC-CACACCCuugaaCGuGGCa -3'
miRNA:   3'- aCGCGUCauaUGGuGUGUGGG-----GC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 83600 0.69 0.726978
Target:  5'- cGUGCcgacgugGUGCC-CAUGCCCgGGGCg -3'
miRNA:   3'- aCGCGuca----UAUGGuGUGUGGGgCCCG- -5'
2713 5' -56.8 NC_001491.2 + 81519 0.66 0.870722
Target:  5'- uUGCGCuGggAUGCCcacggguuaacggugGCGCGgCUCGGGUa -3'
miRNA:   3'- -ACGCGuCa-UAUGG---------------UGUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 81240 0.66 0.85252
Target:  5'- gGCGauuccCGGUGUugACCACGCGCCgCaGGUa -3'
miRNA:   3'- aCGC-----GUCAUA--UGGUGUGUGGgGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 80816 0.66 0.867771
Target:  5'- cGCGCGGcucUGUACgGCgugcuGCGCCaCGGGUu -3'
miRNA:   3'- aCGCGUC---AUAUGgUG-----UGUGGgGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.