miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2713 5' -56.8 NC_001491.2 + 75016 0.66 0.889058
Target:  5'- gGCGgAGUuUGCUGCaaACGCcaCCCGGGUu -3'
miRNA:   3'- aCGCgUCAuAUGGUG--UGUG--GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 74887 0.69 0.717109
Target:  5'- gGCGCAGguaGCCuguCGCAUCuuGGGg -3'
miRNA:   3'- aCGCGUCauaUGGu--GUGUGGggCCCg -5'
2713 5' -56.8 NC_001491.2 + 73253 0.67 0.827332
Target:  5'- uUGgGCAGUuuaGUGCUACACgaggccaACUCUGGGg -3'
miRNA:   3'- -ACgCGUCA---UAUGGUGUG-------UGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 69598 0.67 0.819692
Target:  5'- cGUGCAG-GUugCugGCGagaacgcuacCCCCGGGa -3'
miRNA:   3'- aCGCGUCaUAugGugUGU----------GGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 68720 0.68 0.793269
Target:  5'- aGCGCcGac-GCCGcCACGCCCCaGGUa -3'
miRNA:   3'- aCGCGuCauaUGGU-GUGUGGGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 67598 0.66 0.875084
Target:  5'- aGcCGCAGc--ACCGCGCugUuaacgugucuaCCGGGCg -3'
miRNA:   3'- aC-GCGUCauaUGGUGUGugG-----------GGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 66921 0.67 0.819692
Target:  5'- gGUGCGGUuuuaGCCACG-GCUgCGGGCc -3'
miRNA:   3'- aCGCGUCAua--UGGUGUgUGGgGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 65495 0.73 0.490689
Target:  5'- --aGCAGUGUuggcGCCACAgGugccagccggggaagCCCCGGGCa -3'
miRNA:   3'- acgCGUCAUA----UGGUGUgU---------------GGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 61485 0.71 0.62611
Target:  5'- aGCGCuGUGcGCCGCugGagUCCGGGUa -3'
miRNA:   3'- aCGCGuCAUaUGGUGugUg-GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 58793 0.66 0.889058
Target:  5'- cGUGCAGgacUGCCGCaaACACCgCGGu- -3'
miRNA:   3'- aCGCGUCau-AUGGUG--UGUGGgGCCcg -5'
2713 5' -56.8 NC_001491.2 + 55697 0.7 0.655679
Target:  5'- cGCGgaucaCAGgcaGUACCGCgagguccgaaucgACGCUCCGGGCg -3'
miRNA:   3'- aCGC-----GUCa--UAUGGUG-------------UGUGGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 55072 0.69 0.746461
Target:  5'- cGaCGCGGUGUACacguGgGCACCuuGGaGCg -3'
miRNA:   3'- aC-GCGUCAUAUGg---UgUGUGGggCC-CG- -5'
2713 5' -56.8 NC_001491.2 + 52003 0.73 0.496422
Target:  5'- aUGCGCGGU--ACCGCccaaaACCCCGuGGUa -3'
miRNA:   3'- -ACGCGUCAuaUGGUGug---UGGGGC-CCG- -5'
2713 5' -56.8 NC_001491.2 + 47148 0.71 0.615913
Target:  5'- cGCGCAGa--ACgACGCAUcuaCCUGGGCg -3'
miRNA:   3'- aCGCGUCauaUGgUGUGUG---GGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 42551 0.66 0.85252
Target:  5'- cUGcCGC-GUAUAUCucggcCGCAgCCUGGGCg -3'
miRNA:   3'- -AC-GCGuCAUAUGGu----GUGUgGGGCCCG- -5'
2713 5' -56.8 NC_001491.2 + 34877 0.67 0.836475
Target:  5'- gGCGCGGU--GCCAUgcuGCGCUUCaGGGUc -3'
miRNA:   3'- aCGCGUCAuaUGGUG---UGUGGGG-CCCG- -5'
2713 5' -56.8 NC_001491.2 + 34492 0.69 0.707169
Target:  5'- gGCGUgcUcgGCCACGCGCgCCCuGGCc -3'
miRNA:   3'- aCGCGucAuaUGGUGUGUG-GGGcCCG- -5'
2713 5' -56.8 NC_001491.2 + 31794 0.66 0.85252
Target:  5'- cGUGUAuGUAUGCCGCcuauauuCGCCUgGGGg -3'
miRNA:   3'- aCGCGU-CAUAUGGUGu------GUGGGgCCCg -5'
2713 5' -56.8 NC_001491.2 + 31039 0.68 0.773053
Target:  5'- cGCGUuugAGUccucggaGUACCGCgagcuguGCGCCCUGGGg -3'
miRNA:   3'- aCGCG---UCA-------UAUGGUG-------UGUGGGGCCCg -5'
2713 5' -56.8 NC_001491.2 + 28059 0.7 0.666865
Target:  5'- gGCGCAGc--ACCGCAUACUCUGGa- -3'
miRNA:   3'- aCGCGUCauaUGGUGUGUGGGGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.