Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27130 | 3' | -54.1 | NC_005832.1 | + | 97188 | 1.13 | 0.001829 |
Target: 5'- gCCUUGCCUCCGAGCACGUCGUACUGGg -3' miRNA: 3'- -GGAACGGAGGCUCGUGCAGCAUGACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 97046 | 0.75 | 0.479996 |
Target: 5'- aCCUgGCCUCCcAGUACGaCGUGCUcGGa -3' miRNA: 3'- -GGAaCGGAGGcUCGUGCaGCAUGA-CC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 47669 | 0.72 | 0.663863 |
Target: 5'- --aUGUCgaagCCGAGCACGUUGUAgccggugacgacCUGGg -3' miRNA: 3'- ggaACGGa---GGCUCGUGCAGCAU------------GACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 65071 | 0.7 | 0.735523 |
Target: 5'- ---gGCgUCUGGGC-CGUCGUACUcGGa -3' miRNA: 3'- ggaaCGgAGGCUCGuGCAGCAUGA-CC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 12660 | 0.7 | 0.735523 |
Target: 5'- gCCgccGCC-CCGucCACGUCGUGCUuGGa -3' miRNA: 3'- -GGaa-CGGaGGCucGUGCAGCAUGA-CC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 12516 | 0.7 | 0.745464 |
Target: 5'- uCCUgacUGCCUCCaAGCACGaCGUggACgGGg -3' miRNA: 3'- -GGA---ACGGAGGcUCGUGCaGCA--UGaCC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 91609 | 0.7 | 0.772716 |
Target: 5'- --cUGCCUUCGGGgACGUCGagacucccccuaGCUGGg -3' miRNA: 3'- ggaACGGAGGCUCgUGCAGCa-----------UGACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 24396 | 0.69 | 0.793421 |
Target: 5'- --aUGCCUuccCCGAGCACGUC---UUGGg -3' miRNA: 3'- ggaACGGA---GGCUCGUGCAGcauGACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 98413 | 0.69 | 0.802595 |
Target: 5'- uCCUUGCCUCUGccgacgggaGGCAagaGUgcUGCUGGg -3' miRNA: 3'- -GGAACGGAGGC---------UCGUg--CAgcAUGACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 65820 | 0.69 | 0.820453 |
Target: 5'- -gUUGuCCUCCGuGgACGUCcccgcgcccGUGCUGGa -3' miRNA: 3'- ggAAC-GGAGGCuCgUGCAG---------CAUGACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 72581 | 0.68 | 0.853964 |
Target: 5'- cCCUggGCUUCaGGGUcccgACGUCGUAgUGGa -3' miRNA: 3'- -GGAa-CGGAGgCUCG----UGCAGCAUgACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 103744 | 0.67 | 0.884136 |
Target: 5'- aCCUUGCCcgCC-AGCugGUgGaGCUGa -3' miRNA: 3'- -GGAACGGa-GGcUCGugCAgCaUGACc -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 41946 | 0.67 | 0.884136 |
Target: 5'- gUUUGCCgUCUGGGCACGggggcUCGUACc-- -3' miRNA: 3'- gGAACGG-AGGCUCGUGC-----AGCAUGacc -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 62017 | 0.67 | 0.891111 |
Target: 5'- ---aGCCUCCGGGCugGagGgugUGGg -3' miRNA: 3'- ggaaCGGAGGCUCGugCagCaugACC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 1428 | 0.67 | 0.891111 |
Target: 5'- ---aGCCgUCGAGCAUGaCGUGCgGGg -3' miRNA: 3'- ggaaCGGaGGCUCGUGCaGCAUGaCC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 2247 | 0.67 | 0.897848 |
Target: 5'- ---gGCCagcaccaCGAGCAUGUCGUGgaGGa -3' miRNA: 3'- ggaaCGGag-----GCUCGUGCAGCAUgaCC- -5' |
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27130 | 3' | -54.1 | NC_005832.1 | + | 22695 | 0.66 | 0.927874 |
Target: 5'- aCCUuuucccaaaucUGCa--CGAGCAUGUCGUAUUcGGc -3' miRNA: 3'- -GGA-----------ACGgagGCUCGUGCAGCAUGA-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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